Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121487 |
| Name | oriT_pWP9-W18-ESBL-04_2  |
| Organism | Aeromonas veronii strain WP9-W18-ESBL-04 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP022292 (7018..7051 [-], 34 nt) |
| oriT length | 34 nt |
| IRs (inverted repeats) | 4..9, 13..18 (GCAAAC..GTTTGC) |
| Location of nic site | 27..28 |
| Conserved sequence flanking the nic site |
GTGCGCCCTT |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 34 nt
>oriT_pWP9-W18-ESBL-04_2
CACGCAAACGGAGTTTGCCTAAGTGCGCCCTTAC
CACGCAAACGGAGTTTGCCTAAGTGCGCCCTTAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13544 | GenBank | WP_167557709 |
| Name | mobQ_H7R81_RS22795_pWP9-W18-ESBL-04_2 |
UniProt ID | _ |
| Length | 516 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 516 a.a. Molecular weight: 58013.97 Da Isoelectric Point: 7.2188
>WP_167557709.1 MULTISPECIES: MobQ family relaxase [Aeromonas]
MAIYHCSVKTFSRRNGQSSTAAAAYRSGEKLLDENTGELHDYRRKGGVISATIILPSHAPAWASDRARLW
NEAERAETRINSTVAREFEIALPHELSPNDRERLAHEFARELVEKHGFAADVAIHAPPEFQKGGTGKVID
NQNHHAHILLSTRRLGPNGFTEKTREFDARSNERDDDSYLFGPALIEHWRERFALLQNLYLARAGVAAQV
DHRSNKARGLDAVPTRHLGPAVVGFERRMGIDSEKRQREALAVRAVDERVQELDAEVRGELAELDAQEAV
IAAELAENLRYVAMDDAELTEVISKTQPADIDAQVASSWEVSKAKSDVTELEGERDSVARRITSWEEGHG
FRTWLNSKGIGGAELDELRTELEQLGNRITKAIRRVRKATEAASARLWPEYNRRITLFDELIELRKAKRQ
RKILQVQKAQSLDFTTIALQRSLGAFGWADGGREWNACPKPLQRLIEDYLSTSGGERETMSAEIGRSRDV
RDWLAQQKRGIDPAPAPKRNHGPRLG
MAIYHCSVKTFSRRNGQSSTAAAAYRSGEKLLDENTGELHDYRRKGGVISATIILPSHAPAWASDRARLW
NEAERAETRINSTVAREFEIALPHELSPNDRERLAHEFARELVEKHGFAADVAIHAPPEFQKGGTGKVID
NQNHHAHILLSTRRLGPNGFTEKTREFDARSNERDDDSYLFGPALIEHWRERFALLQNLYLARAGVAAQV
DHRSNKARGLDAVPTRHLGPAVVGFERRMGIDSEKRQREALAVRAVDERVQELDAEVRGELAELDAQEAV
IAAELAENLRYVAMDDAELTEVISKTQPADIDAQVASSWEVSKAKSDVTELEGERDSVARRITSWEEGHG
FRTWLNSKGIGGAELDELRTELEQLGNRITKAIRRVRKATEAASARLWPEYNRRITLFDELIELRKAKRQ
RKILQVQKAQSLDFTTIALQRSLGAFGWADGGREWNACPKPLQRLIEDYLSTSGGERETMSAEIGRSRDV
RDWLAQQKRGIDPAPAPKRNHGPRLG
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 21914 | GenBank | NZ_AP022292 |
| Plasmid name | pWP9-W18-ESBL-04_2 | Incompatibility group | - |
| Plasmid size | 9170 bp | Coordinate of oriT [Strand] | 7018..7051 [-] |
| Host baterium | Aeromonas veronii strain WP9-W18-ESBL-04 |
Cargo genes
| Drug resistance gene | qnrS2 |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |