Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121478
• Name: oriT_pSTHERMO
• Organism: Streptococcus thermophilus isolate STH_CIRM_998
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_LR822028 (1899..1939 [+], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_pSTHERMO
CACTTTTACGAAGTAAAGTATAGTGCGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_H1X63_RS10335_pSTHERMO

• ID: 13539
• GenBank: WP_180487822
• Name: mobV_H1X63_RS10335_pSTHERMO
• UniProt ID: _
• Length: 499 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 499 a.a.
• Molecular weight: 58421.95 Da
• Isoelectric Point: 5.7403

>WP_180487822.1 MobV family relaxase [Streptococcus thermophilus]
MSYMVARMQKMKAGNLGGAYKHNERVFETHSNKDIDPSRSHLNYELTDRDRSVSYERQIKDYVNENKISN
RAIRKDAVLCDEWIITSDKSFFEKLSEEETREFFETAKNYFAENYGEDNIAYASVHLDESTPHMHMGVVP
FQDGKLSSKAMFDKEELKKIQEDLPKYMNEHGFELERGELNSEAKHKTVAEFKQEMAGKEIEKQLVLEYG
APEYVNHQEEFVTKEEYQEAYEVFQNELGAWVDKSDFSWRETTFQEKIDWVKNHQQEELQQLVSSRKPLE
DEIRTLNEVLKEKYEELDKIELRASESLSELSGVEEYINNLEKHSNALESKIGGLENEYLRLAKQNARLS
DLKIMSEKELAEIQLKKGMFGKEHVELTKEQFEKFKGLIYRSKNLVHEKELENGQLRRQMPLRSSKNGFE
ASLQRAKDKTKGESIDRLKSEIRGLKNENSVLRQQNDKMLGKLREFMPDKALKNFVSELKAIQPIVKIVK
RVIEKGLGL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 21905
• GenBank: NZ_LR822028
• Plasmid name: pSTHERMO
• Incompatibility group: -
• Plasmid size: 4395 bp
• Coordinate of oriT [Strand]: 1899..1939 [+]
• Host baterium: Streptococcus thermophilus isolate STH_CIRM_998

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -