Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121466
Name   oriT_pSAMIE_7 in_silico
Organism   Sphingobium amiense strain DSM 16289
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP018670 (7833..7865 [+], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pSAMIE_7
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13534 GenBank   WP_332005074
Name   mobQ_SAMIE_RS23180_pSAMIE_7 insolico UniProt ID   _
Length   333 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 333 a.a.        Molecular weight: 36810.02 Da        Isoelectric Point: 6.4046

>WP_332005074.1 MobQ family relaxase [Sphingobium amiense]
MASFHLAVKAIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHSELMLPTDAPEWAADRERLW
NAAELAETRKNATVAREYEIALPVELSADERRELALGLAREISERHGVAVDVSIHAPGREGDQRNHHAHL
LTTTRRLGPEGLGEKTRELDQKQSGEVERWRERWAEMQNRALELANVPDRVDHRSHQRQGIEQEPTVHMG
PSATAMERRAEQVAAREGRAYEPVTAVGQHNAGVVERAGLRQYIERGTEWLRDRRHLKVCAPNNDLADIS
GTFGVVGLVCLSDQRELDPTPHDGGSALQGFDGDIAIGGIKHAVYLCPAGMHQ

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-219)


  Protein structure



No available structure.




Host bacterium

ID   21893 GenBank   NZ_AP018670
Plasmid name   pSAMIE_7 Incompatibility group   -
Plasmid size   9977 bp Coordinate of oriT [Strand]   7833..7865 [+]
Host baterium   Sphingobium amiense strain DSM 16289

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -