Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121445
• Name: oriT_E8202|7
• Organism: Enterococcus faecium isolate E8202
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_LR135350 (1939..1979 [+], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_E8202|7
CACTTTTACGAAGTAAAGTATAGTGCGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_EQB38_RS17215_E8202|7

• ID: 13521
• GenBank: WP_127820654
• Name: mobV_EQB38_RS17215_E8202|7
• UniProt ID: _
• Length: 496 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 496 a.a.
• Molecular weight: 57357.37 Da
• Isoelectric Point: 5.4317

>WP_127820654.1 MobV family relaxase [Enterococcus faecium]
MSHIVARMQKMKAGNLGGAYRHNERVFENHSNKDIDPDKSHLNYELTERDRGLSYEAQIKDYVNENKISQ
RAIRKDAVLCDEWIITSDKAFFENLSPEETREFFEIAKDYFAQNYGEQNIAYASVHLDESTPHMHMGVVP
MRDGKLSSKAMFDREELLKIQDDLPKYMRERGFEIERGARNSEAKHLTVAEFKQEMAYKEIESELVVDYG
APQFVNTNTGEFMTPKEVEEVQSIAELFGDKFELNMRETSFEEKLDWVKNKQNLELKRLDELKKPLEEEV
QGLESLLNEKHEELSKIDFKVSEGLSELSEAEEYINTLETRSKALEAKITAFESENLKLAKQNARLTDLK
IMDEGELGQIKPKKGLLGSERVELTKEQFEEFKGLIYRSKNVIHQKELELQQAKSQVPLRGSKNGFEAQL
QKAKDKMKGDNVKALKDELKALKDENSVLKQKNAKMADKLKELMPDKAFKLFMDELKKITPIVKVVTKVI
EKIISI

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (2-194)

Protein structure

No available structure.

Host bacterium

• ID: 21872
• GenBank: NZ_LR135350
• Plasmid name: E8202|7
• Incompatibility group: -
• Plasmid size: 4203 bp
• Coordinate of oriT [Strand]: 1939..1979 [+]
• Host baterium: Enterococcus faecium isolate E8202

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -