Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121444 |
| Name | oriT_E7098|3  |
| Organism | Enterococcus faecium isolate E7098 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LR135256 (144003..144040 [-], 38 nt) |
| oriT length | 38 nt |
| IRs (inverted repeats) | 14..22, 29..37 (TAAAGTATA..TATACTTTA) 2..8, 13..19 (ACTTTAT..ATAAAGT) |
| Location of nic site | 27..28 |
| Conserved sequence flanking the nic site |
GTGTGTTATA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 38 nt
>oriT_E7098|3
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13520 | GenBank | WP_000119405 |
| Name | mobV_EQB68_RS15780_E7098|3 |
UniProt ID | F5X340 |
| Length | 420 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 420 a.a. Molecular weight: 49660.33 Da Isoelectric Point: 9.9693
>WP_000119405.1 MULTISPECIES: MobV family relaxase [Bacteria]
MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKEIIESQKTGTR
KTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPM
RDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVK
KDEWTAYSDKVKSDLEVPAKRHMKSVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDN
DRLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSL
IYESTKEFLKERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL
MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKEIIESQKTGTR
KTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPM
RDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVK
KDEWTAYSDKVKSDLEVPAKRHMKSVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDN
DRLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSL
IYESTKEFLKERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | F5X340 |
T4CP
| ID | 15827 | GenBank | WP_002320854 |
| Name | tcpA_EQB68_RS15150_E7098|3 |
UniProt ID | _ |
| Length | 458 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 458 a.a. Molecular weight: 50784.68 Da Isoelectric Point: 9.1998
>WP_002320854.1 MULTISPECIES: FtsK/SpoIIIE domain-containing protein [Enterococcus]
MAMKLLEKVKKRAEKAESILLDKEPNIKLNGKFSVNMLNTKAKDPTDAIFGIKPDGTIAHFCISEMPHML
VAGTTGSGKSVLLNEILVTAMCHSTPDELKIGIVDPKRVEFGRYKKLPFMLADPITDMDEAYDFFEYLVI
LMHERYKLMEKAGLQNITLYNEYAEKNGLDRFPYVILLVDEYSQLVGTHKEVEGLIVQLGQMARAAGIHV
ILATQSPRSTVVTGIIKANFPSRVCLMVASDLESRIVLDEGGGESLSPKGDMIIKLVNGSMVRAQGAYIS
NKEIETIFNHLRNTMPEPEYVDYRAIVAESRGEGGEDEDFGGIGKAPVRKSAKRNLNTPLANSSSKEPSI
EKKSTFALKLEKNKEEKEKQGAKTLEKLQAEKLEKVLKALDKADSEPQTSNNTNNEQPISSKTKPKTTDP
KVSVNVTITTDKSEKKQVNGTTSPIMQKMLKAKKQVHK
MAMKLLEKVKKRAEKAESILLDKEPNIKLNGKFSVNMLNTKAKDPTDAIFGIKPDGTIAHFCISEMPHML
VAGTTGSGKSVLLNEILVTAMCHSTPDELKIGIVDPKRVEFGRYKKLPFMLADPITDMDEAYDFFEYLVI
LMHERYKLMEKAGLQNITLYNEYAEKNGLDRFPYVILLVDEYSQLVGTHKEVEGLIVQLGQMARAAGIHV
ILATQSPRSTVVTGIIKANFPSRVCLMVASDLESRIVLDEGGGESLSPKGDMIIKLVNGSMVRAQGAYIS
NKEIETIFNHLRNTMPEPEYVDYRAIVAESRGEGGEDEDFGGIGKAPVRKSAKRNLNTPLANSSSKEPSI
EKKSTFALKLEKNKEEKEKQGAKTLEKLQAEKLEKVLKALDKADSEPQTSNNTNNEQPISSKTKPKTTDP
KVSVNVTITTDKSEKKQVNGTTSPIMQKMLKAKKQVHK
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 21871 | GenBank | NZ_LR135256 |
| Plasmid name | E7098|3 | Incompatibility group | - |
| Plasmid size | 155151 bp | Coordinate of oriT [Strand] | 144003..144040 [-] |
| Host baterium | Enterococcus faecium isolate E7098 |
Cargo genes
| Drug resistance gene | VanHAX, erm(B), aph(3')-III, ant(6)-Ia, lnu(B), tet(L) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |