Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121433 |
| Name | oriT_PP4  |
| Organism | Pseudomonas syringae pv. avii isolate CFBP3846 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LT963406 (46759..46940 [-], 182 nt) |
| oriT length | 182 nt |
| IRs (inverted repeats) | 82..89, 93..100 (CAAAGGGG..CCCCTTTG) 44..49, 58..63 (AAAAAG..CTTTTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 182 nt
>oriT_PP4
AAATCTCGAATTTGCTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGTAGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCAGAGCGGGAAAGCGTTGTCGCTGTCGTTGTTGGTTGTCGTCATCCAGGTTCCCTCAGGAGGTGATCTTGTGGC
AAATCTCGAATTTGCTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGTAGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCAGAGCGGGAAAGCGTTGTCGCTGTCGTTGTTGGTTGTCGTCATCCAGGTTCCCTCAGGAGGTGATCTTGTGGC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13511 | GenBank | WP_231994146 |
| Name | MobA_MobL_C6H38_RS31175_PP4 |
UniProt ID | _ |
| Length | 165 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 165 a.a. Molecular weight: 18032.25 Da Isoelectric Point: 6.8864
>WP_231994146.1 MobA/MobL family protein [Pseudomonas syringae]
MFATVEDARQELASAFGIELATRYGVAVDLAIHLPNREGDNRNHHAFVMTTTRQVSRDATGLLVMGEKST
IELSDTKRRSVGLGSAADEVVAIRRLWEQMANRALENAGSDARIDSRSLKAQGLDREATMHLGPVASDME
RRGKASDRGDGNRKVAVNNAMLEQI
MFATVEDARQELASAFGIELATRYGVAVDLAIHLPNREGDNRNHHAFVMTTTRQVSRDATGLLVMGEKST
IELSDTKRRSVGLGSAADEVVAIRRLWEQMANRALENAGSDARIDSRSLKAQGLDREATMHLGPVASDME
RRGKASDRGDGNRKVAVNNAMLEQI
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 15821 | GenBank | WP_060412321 |
| Name | t4cp2_C6H38_RS31395_PP4 |
UniProt ID | _ |
| Length | 557 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 557 a.a. Molecular weight: 61784.48 Da Isoelectric Point: 6.6036
>WP_060412321.1 type IV secretory system conjugative DNA transfer family protein [Pseudomonas syringae]
MARAKSKPISPDNPQERIEEHPAILIGKHPTKDTFLASYGQTFVMLAAPPGTGKTVGVVTPNLLSYPDSV
VVNDPKFENWRDTAGFRAAAGHKVYRFSPELLETHRWNPLSALSRDPLYRLGQIRTLAGVLFVSDNPKNQ
EWYNKAANVFAAILLYLMEMEGMKLNGMKLTLPQAYEVASLGTGLGVWAQQAIEQHSTGPNALSVETLRE
LNGVFEASKNKSSGWSTTVDILRGALSMYAEKTVAWAVSDTDIDFTKLRKEKISIYFCVTGNAIKKYGPL
MNLFFTQAIQQNTDVMPEQGGHCADGTLILKYQVLFVIDEIAVMGRIEIMEMAPALTRGAGLRYIIIFQG
KDQLRSERTYGREAGNGIMQAFHIEIVYGTGNVELAKEYSTRLGNTTVRVHNQSLNRQKHEIGARGQTDS
YSEQPRPLLLPQEVSALPYGEELIFVEATKTTPAANIRARKIFWYEEPVFKERAGMPTPDVPIGDASKID
ALTVPVRTVEAKVAVADTKPMQAEQRQRWNPKDKASEVARAEAVKAQPPEFEPDPEPAQADDTPETM
MARAKSKPISPDNPQERIEEHPAILIGKHPTKDTFLASYGQTFVMLAAPPGTGKTVGVVTPNLLSYPDSV
VVNDPKFENWRDTAGFRAAAGHKVYRFSPELLETHRWNPLSALSRDPLYRLGQIRTLAGVLFVSDNPKNQ
EWYNKAANVFAAILLYLMEMEGMKLNGMKLTLPQAYEVASLGTGLGVWAQQAIEQHSTGPNALSVETLRE
LNGVFEASKNKSSGWSTTVDILRGALSMYAEKTVAWAVSDTDIDFTKLRKEKISIYFCVTGNAIKKYGPL
MNLFFTQAIQQNTDVMPEQGGHCADGTLILKYQVLFVIDEIAVMGRIEIMEMAPALTRGAGLRYIIIFQG
KDQLRSERTYGREAGNGIMQAFHIEIVYGTGNVELAKEYSTRLGNTTVRVHNQSLNRQKHEIGARGQTDS
YSEQPRPLLLPQEVSALPYGEELIFVEATKTTPAANIRARKIFWYEEPVFKERAGMPTPDVPIGDASKID
ALTVPVRTVEAKVAVADTKPMQAEQRQRWNPKDKASEVARAEAVKAQPPEFEPDPEPAQADDTPETM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 21860 | GenBank | NZ_LT963406 |
| Plasmid name | PP4 | Incompatibility group | - |
| Plasmid size | 77492 bp | Coordinate of oriT [Strand] | 46759..46940 [-] |
| Host baterium | Pseudomonas syringae pv. avii isolate CFBP3846 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |