Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 121422 |
Name | oriT_pA156_1 |
Organism | Levilactobacillus brevis strain A156 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP142717 (3524..3543 [-], 20 nt) |
oriT length | 20 nt |
IRs (inverted repeats) | _ |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pA156_1
GTGGGGTGTAAGTGCGCATT
GTGGGGTGTAAGTGCGCATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 13504 | GenBank | WP_331764467 |
Name | mobQ_VDS59_RS00035_pA156_1 | UniProt ID | _ |
Length | 687 a.a. | PDB ID | |
Note | Predicted by oriTfinder 2.0 |
Relaxase protein sequence
Download Length: 687 a.a. Molecular weight: 80556.98 Da Isoelectric Point: 8.9221
>WP_331764467.1 MobQ family relaxase [Levilactobacillus brevis]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDYKEGRHYFYARSVMPESFILTPKNAPAWASDREQLWN
EVERKDRRANSRYAKEFNVALPVELIEDEQKELLTKYVQENFVDEGMVADVAIHRDRPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
ERISEKSFTEQGIDDTPTQHEGINSNRYERKEFNQQVKNYRKAKASYKNNQEKAINRGHLDSLSEHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKELLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETESEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGFKLL
MQQEKEAKIDLKYTLMIHSDSLESLEHVDQGLLEKYSPAEQQTITRAVKDLRTIMAVKQVIQTQYQEVLR
KAFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQENPPRVFSTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPMIKNSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPEY
YLKTAFSDAIMAALYARDEDYQRQRQAQGLKEAEWEMTKKQRQHQTRNRHEDGGMHL
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDYKEGRHYFYARSVMPESFILTPKNAPAWASDREQLWN
EVERKDRRANSRYAKEFNVALPVELIEDEQKELLTKYVQENFVDEGMVADVAIHRDRPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
ERISEKSFTEQGIDDTPTQHEGINSNRYERKEFNQQVKNYRKAKASYKNNQEKAINRGHLDSLSEHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKELLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETESEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGFKLL
MQQEKEAKIDLKYTLMIHSDSLESLEHVDQGLLEKYSPAEQQTITRAVKDLRTIMAVKQVIQTQYQEVLR
KAFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQENPPRVFSTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPMIKNSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPEY
YLKTAFSDAIMAALYARDEDYQRQRQAQGLKEAEWEMTKKQRQHQTRNRHEDGGMHL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
ID | 15810 | GenBank | WP_331764523 |
Name | t4cp2_VDS59_RS00095_pA156_1 | UniProt ID | _ |
Length | 516 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 516 a.a. Molecular weight: 57979.95 Da Isoelectric Point: 4.6488
>WP_331764523.1 VirD4-like conjugal transfer protein, CD1115 family [Levilactobacillus brevis]
MNGTILGIVDKQIVYQNNSTKPNRNIFVVGGPGSYKTQSVVITNLFNETENSIVVTDPKGELYEKTAGIK
LAQGYQVHVVNFANMAHSDGYNPFDYIQRDIQAETVATKIVQSENAEGKKDVWFSTQRQLLKALILFVMN
HRSPEQRNLAGVTQVLQENDVEAEEKGADSPLDTLFLDLTMSDPARRAYELGFKKAKGEMKASIIESLLA
TISKFVDKEVAEFTSFSDFDLKEIGNDKVVLYVIIPVMDNTYESFINLFFSQLFDELYKLAADNHAKLPH
QVDFILDEFVNLGKFPKYEEFLATCRGYGIGVTTICQTLTQLQALYGKDKAESILGNHAVKICLNAANDV
TAKYFSDLLGKSTVKVETGSESTSHSKEESHSKSDSYSYTSRSLMTPDEIMRMPEEHSLLIFSNARPVKA
TKAFQFKLFPGADHLVNLSQNDYQGQPETSQETNFKDKVEKWKAKLKETAQKEAANEMSQTEEEQQQDNL
DSDLERVSNKDSQTEEPEEDDNNLLG
MNGTILGIVDKQIVYQNNSTKPNRNIFVVGGPGSYKTQSVVITNLFNETENSIVVTDPKGELYEKTAGIK
LAQGYQVHVVNFANMAHSDGYNPFDYIQRDIQAETVATKIVQSENAEGKKDVWFSTQRQLLKALILFVMN
HRSPEQRNLAGVTQVLQENDVEAEEKGADSPLDTLFLDLTMSDPARRAYELGFKKAKGEMKASIIESLLA
TISKFVDKEVAEFTSFSDFDLKEIGNDKVVLYVIIPVMDNTYESFINLFFSQLFDELYKLAADNHAKLPH
QVDFILDEFVNLGKFPKYEEFLATCRGYGIGVTTICQTLTQLQALYGKDKAESILGNHAVKICLNAANDV
TAKYFSDLLGKSTVKVETGSESTSHSKEESHSKSDSYSYTSRSLMTPDEIMRMPEEHSLLIFSNARPVKA
TKAFQFKLFPGADHLVNLSQNDYQGQPETSQETNFKDKVEKWKAKLKETAQKEAANEMSQTEEEQQQDNL
DSDLERVSNKDSQTEEPEEDDNNLLG
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 7115..23692
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
VDS59_RS00020 (VDS59_11405) | 2505..2876 | + | 372 | Protein_3 | hypothetical protein | - |
VDS59_RS00025 (VDS59_11410) | 2866..3144 | - | 279 | WP_082265514 | hypothetical protein | - |
VDS59_RS00030 (VDS59_11415) | 3166..3375 | - | 210 | WP_082265513 | hypothetical protein | - |
VDS59_RS00035 (VDS59_11420) | 3646..5709 | + | 2064 | WP_331764467 | MobQ family relaxase | - |
VDS59_RS00040 (VDS59_11425) | 5793..6104 | + | 312 | WP_063846748 | hypothetical protein | - |
VDS59_RS00045 (VDS59_11430) | 6140..6754 | + | 615 | WP_331764472 | hypothetical protein | - |
VDS59_RS00050 (VDS59_11435) | 6756..7094 | + | 339 | WP_082265510 | CagC family type IV secretion system protein | - |
VDS59_RS00055 (VDS59_11440) | 7115..7477 | + | 363 | WP_014216295 | hypothetical protein | trsC |
VDS59_RS00060 (VDS59_11445) | 7446..8105 | + | 660 | WP_331764509 | TrsD/TraD family conjugative transfer protein | trsD |
VDS59_RS00065 (VDS59_11450) | 8117..10132 | + | 2016 | WP_331764511 | helicase HerA domain-containing protein | virb4 |
VDS59_RS00070 (VDS59_11455) | 10125..11543 | + | 1419 | WP_331764513 | type VII secretion protein EssB/YukC | trsF |
VDS59_RS00075 (VDS59_11460) | 11544..12698 | + | 1155 | WP_331764515 | phage tail tip lysozyme | prgK |
VDS59_RS00080 (VDS59_11465) | 12712..13329 | + | 618 | WP_331764517 | hypothetical protein | - |
VDS59_RS00085 (VDS59_11470) | 13316..13684 | + | 369 | WP_331764519 | thioredoxin family protein | - |
VDS59_RS00090 (VDS59_11475) | 13685..14155 | + | 471 | WP_331764521 | conjugal transfer protein | trsJ |
VDS59_RS00095 (VDS59_11480) | 14157..15707 | + | 1551 | WP_331764523 | VirD4-like conjugal transfer protein, CD1115 family | - |
VDS59_RS00100 (VDS59_11485) | 15722..16111 | + | 390 | WP_082265575 | hypothetical protein | - |
VDS59_RS00105 (VDS59_11490) | 16130..16969 | + | 840 | WP_085763775 | conjugal transfer protein TrbL family protein | trsL |
VDS59_RS00110 (VDS59_11495) | 16982..17392 | + | 411 | WP_085763774 | hypothetical protein | - |
VDS59_RS00115 (VDS59_11500) | 17399..19534 | + | 2136 | WP_331764527 | DNA topoisomerase III | - |
VDS59_RS00120 (VDS59_11505) | 19656..19871 | + | 216 | WP_110140172 | hypothetical protein | - |
VDS59_RS00125 (VDS59_11510) | 19875..20999 | + | 1125 | WP_331764528 | ArdC-like ssDNA-binding domain-containing protein | - |
VDS59_RS00130 (VDS59_11515) | 21155..21244 | - | 90 | WP_072672334 | putative holin-like toxin | - |
VDS59_RS00135 (VDS59_11520) | 21430..21576 | - | 147 | WP_255033705 | restriction endonuclease subunit S | - |
VDS59_RS00140 (VDS59_11525) | 21809..23692 | - | 1884 | WP_331764550 | collagen-binding domain-containing protein | prgC |
VDS59_RS00145 (VDS59_11530) | 23822..24925 | + | 1104 | WP_216754759 | AraC family transcriptional regulator | - |
VDS59_RS00150 (VDS59_11535) | 24975..25904 | - | 930 | WP_011666862 | IS30-like element ISLpl1 family transposase | - |
VDS59_RS00155 (VDS59_11540) | 26219..27595 | - | 1377 | WP_112304354 | FAD-dependent oxidoreductase | - |
Host bacterium
ID | 21849 | GenBank | NZ_CP142717 |
Plasmid name | pA156_1 | Incompatibility group | - |
Plasmid size | 53925 bp | Coordinate of oriT [Strand] | 3524..3543 [-] |
Host baterium | Levilactobacillus brevis strain A156 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |