Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121354
• Name: oriT_p19EPI0118-1
• Organism: Macrococcoides canis strain 19/EPI0118
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP072838 (1002..1025 [+], 24 nt)
• oriT length: 24 nt
• IRs (inverted repeats): 1..6, 19..24 (TAAAGT..ACTTTA)
• Location of nic site: 14..15
• Conserved sequence flanking the nic site: GTGTGTTATA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 24 nt

>oriT_p19EPI0118-1
TAAAGTCTAGTGTGTTATACTTTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_J9174_RS12230_p19EPI0118-1

• ID: 13473
• GenBank: WP_210153057
• Name: mobV_J9174_RS12230_p19EPI0118-1
• UniProt ID: _
• Length: 546 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 546 a.a.
• Molecular weight: 63942.24 Da
• Isoelectric Point: 4.9987

>WP_210153057.1 MobV family relaxase [Macrococcoides canis]
MSYSIIRVEKIKGAVNTTGIQKHVQRENNNYGNEDIQHELTHENYDLIHDDEKINFNEEIEQKIEENYTV
NRAIRKDAVKHIDGIVTSDKEFFDGLTLEQTREYFEDSLEFIKEEYGEENILYATVHMDEATPHMHFGFV
PITKDGRLSAKEMLGNKKAFTELQDRYNRFVNERGYKLERGESKHITGEKHREVNAYKQKTKYHEKEMQE
KLNEVEKLEIKKESIQKEIDEKISTSEAKLDDLRAEYEKLGEKYEIEKERLEKPLNVKYEKEIKTEGNLF
SKEEVETGNVIVAESDFKEMVAQTESARNLLEKFDDLNNGTEIQELRAEVGRLNNILDSAIEDIDKFEKE
IGHLAKENKILKNSNKKLKVQNKAQIDVIKGIRGAFNKTMKGLKEIVGDQKLSKMIFAVDKLFKNKEFFR
NLVVGFDKKYKNLFVLKDKRDLIKQDVIFAKEFNFVDIKENVMRAQVIDDDGVEHIKDFQLTNEELVNLK
NNPTRYSAFMFRESGKIVLADMNDLELPNEINYDVNFGLEGLEEVEEIFKGIDLQR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-199)

Protein structure

No available structure.

Host bacterium

• ID: 21781
• GenBank: NZ_CP072838
• Plasmid name: p19EPI0118-1
• Incompatibility group: -
• Plasmid size: 3561 bp
• Coordinate of oriT [Strand]: 1002..1025 [+]
• Host baterium: Macrococcoides canis strain 19/EPI0118

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -