Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121353
Name   oriT_ICDC2|unnamed in_silico
Organism   Streptococcus salivarius strain ICDC2
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP018188 (121158..121337 [-], 180 nt)
oriT length   180 nt
IRs (inverted repeats)      105..110, 124..129  (TGAAGT..ACTTCA)
 18..23, 30..35  (AGGAAA..TTTCCT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 180 nt

>oriT_ICDC2|unnamed
GGGTAAAGGAAGAATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTATTGTGTGAGACACTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13472 GenBank   WP_231606009
Name   Replic_Relax_BSR19_RS10945_ICDC2|unnamed insolico UniProt ID   _
Length   422 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 422 a.a.        Molecular weight: 49653.13 Da        Isoelectric Point: 6.3242

>WP_231606009.1 replication-relaxation family protein [Streptococcus salivarius]
MQDIKNRDFTSLISNKKNKIHYTQRNKIATYFVSKNQNISLSFSEEELIIFYHLLRFGYFDKEIVDLIYT
AVTRKFKTPNSWFYRLVGKVNHPISACSDARSGKRKLYYLNKGFSTWLLTMIKGIEKIRLLTTTTEYDRS
VYSIVTNNLLGGKPQTVNIHDLETRRLVAKILNKLFVKNKDKSVYDLNIQVVFPISRVNLLMVPDAVIFV
NDNPFFIEYDRATERQTILLSKIFGYAEEPAFENSSLFFVFESSRKDNTQVSKRLMNFLEYVNEVEVEGV
TGYDMLKLKNISLFSQTTTNASDVIVEIIQEKMFSNHKDWCDCEAYDFSELHKIDYLVKEISEPLDDDKF
QLSAIVETDSWELKEYPMIPMAYIKSDLIPHLTSLYEEFSIEYEHMIIVFPKEVLPEKIKLPFDDYFFIV
YR

  Protein domains



No domain identified.



  Protein structure



No available structure.




T4CP

ID   15781 GenBank   WP_156247149
Name   t4cp2_BSR19_RS10935_ICDC2|unnamed insolico UniProt ID   _
Length   1011 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 1011 a.a.        Molecular weight: 116461.96 Da        Isoelectric Point: 4.9945

>WP_156247149.1 hypothetical protein [Streptococcus salivarius]
MRKILKLFFNRYYTNGKRTIDILLYCWRKYIDWVYHISFGLFAFNIIMFIFRWRLPNWVFISLFLFLFVN
MALVLYIGVWHTNVTSRQIFVLFEKYDTLKRAERKKIIGKYAIRAALAAVLISSGLYVLTINNFILSLIN
RMYDVADNYLKYMPWSIPNGSQTGIVLSYHTLKPLIGADWFNSLLLLTPIGAIGLIFYNSYATGIAEKTY
EKLVEQWLGGRYFQDSVLSNIVHNQDEKGQANLVMGRNSKTGEQVILHANERTYHTIIFGLIGTGKSATI
LIPAMLQDMENMKYYLLSYRKYLMKIDEELEEEFFSTEFERKKKRRELLEQWYNNGYAAELTNGIYMTEP
SGSMYGTIVKYAHKMGFPDEMIWTLDPTNPGTGAINILDGDTTQVKGAVRDLFKRFSDPSGTGSSFFLNQ
EGQLTDNIITVIKEVALIPDAPINYMLKGKSPTLTEFSNMLRSSDWIEAYIAVFEQLLNRKKRLFEETLK
KHEEFLEQEKEKWLEESEYNREHEQLFDTILRPEKVHEAINAFNDERNKLENLQSSYDYFINAHQLNSYT
EEYYYTFDANVSGLKAVIDDLSSSPEIRRVFFSQSTKDLDIVLKTGGMILVNSAKGVLGKEKSRMVAQMV
TLVMQNAAQRRLPDKSPFFAFYEDEKNGYLMPGNDSNFLDESRKFHVPVMHAYQHDEQIRDSIGESGADA
IKMSYRNAFTFQQASTKVVEFINLRSGGKHYALKETKRAANDDLLAGNRGNSSATSEEVVEEDNFTARDA
NNLEKFQLAGVIVSDDEISKMIYLTKSPHFEMDISKDSFVSHAPFNKVYGLGEEEPEIAKAYKLWRAEVI
EYYAQKESESHLYESDFTEEEWQAIMDVKVPNVNSNVNDTVGKKDDSPSVKRTILVNESMTEHRENTSIR
EEATEGTEQIEENNISEIPTVVEEKQTVNNNNDIVELKDEEITQRVILAPSSTPETVDTQNIQAPNQEFE
LPQELSRVAREKAPKTLKSNVEQMAIDEEGF

  Protein domains



No domain identified.


  Protein structure



No available structure.




Host bacterium

ID   21780 GenBank   NZ_CP018188
Plasmid name   ICDC2|unnamed Incompatibility group   -
Plasmid size   188293 bp Coordinate of oriT [Strand]   121158..121337 [-]
Host baterium   Streptococcus salivarius strain ICDC2

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA9