Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121343
Name   oriT_18ISCm|unnamed2 in_silico
Organism   Carnobacterium maltaromaticum strain 18ISCm
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP045042 (12620..12664 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_18ISCm|unnamed2
AATATCGCAACTGGGTACCCAGTTGCTCTGCTCGCAAAAGGAAAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13467 GenBank   WP_157456762
Name   Relaxase_F9281_RS17945_18ISCm|unnamed2 insolico UniProt ID   _
Length   559 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 559 a.a.        Molecular weight: 64661.96 Da        Isoelectric Point: 6.1357

>WP_157456762.1 relaxase/mobilization nuclease domain-containing protein [Carnobacterium maltaromaticum]
MVYTKHFVIHTFDQLHDAEKYITDAMKTIVEKSDASSHLNTLFRYVASDDKTMMKQLVSSHGIIDIENAY
EEFKYTKLQSAYKKGNSFSFDSKNGRMRKPTLSDLEKNNAVLAHHLIQSFSPDDPLTPEQIHEIGRKTVL
ELTGGTHEFVIATHVDKDHIHNHIVFNSTNMKSGNAFRWQKGTKNVYEQISDKIASKEGAKIIEKSPKNS
HKKYTMYQTESIFKQKIKSRLDFLMDHSSSLDDFLTKAEALELSVDFSKKWSTFRLLDEPQVKNTRGRSL
FKKDPNRYDLEKIVDHINMNTETFTVEDVVSRYEEKVNRKENDFDYQITLESWQISHKTTKGYYLNVDFG
FGNHGQLFIGAYKVDALDNGDYNLFVKRNDFFYFMNNQKADRSRYMTGETLIKQLQLYNGITPLKKEPVM
STIDELVDAINFLAEHEITDGRQLNLLEEKLENAFTEAEAALETLDEKIIELHQVGKLLLEAETNEDKAE
IQDKLKAFVPNAILSEITFEDVQSEISSASKSLELLETKLEQTVKKMNHLHEIQAVTEMNQEKPTQQRL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(37-283)


  Protein structure



No available structure.




T4CP

ID   15775 GenBank   WP_157456756
Name   t4cp2_F9281_RS17905_18ISCm|unnamed2 insolico UniProt ID   _
Length   605 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 605 a.a.        Molecular weight: 69313.30 Da        Isoelectric Point: 6.1734

>WP_157456756.1 VirD4-like conjugal transfer protein, CD1115 family [Carnobacterium maltaromaticum]
MQPYKKNFKPYLILAIILSMVGFVLGNFLWLLPGYDIYSKLLFLFNRDVSGFVNDSILQIFFKPSLFAFG
VGMLGFLSGMLAYVHNNDSGIYRHGEEYGSARFATTEEIVKFADKEKPENDLIYTRHARMCLFNSRLAFE
FQKNKNAIVIGGPGSGKTFTFIKPNIMQMNASFIVTDPKKLLVHETGKMLKDNGYKIKIFDLATLANSDS
FNVFNYIKTELDVDRVLEAITEGTKKNDQQGGEDFWRQAEALLIRSFIAYLWFDGQENDYTPHLGMIADM
LRLTERKDPKVPSPVEMWFEEQNERIPNNYAYKQFTLFNDLYKSETRMSVLAIAAGRYSIFDHEQVVDMV
REDTMDIESWNEEKTAVFIAIPETSDTYNFLSAIFLATAMEVLRKKADEVLTGERILAMGKKLLHIRFLI
DEFANIGRIPNIDKALATFRSREMSIVIVLQALDQLKTMYKNGWATLVNTCDSFLFLGGDEKETTEYLSK
RAGKQTISLRKTSVSRGRQGSSSESKDKTGRDLLTPDEIGRLKGTDALLFISGQFVYKDKKYTVHEHEQA
HLLSNTPGDANWFTYKRYRNEEEELLDKVRKEDIVDHGVITDEAA

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(139-557)

  Protein structure



No available structure.




Host bacterium

ID   21770 GenBank   NZ_CP045042
Plasmid name   18ISCm|unnamed2 Incompatibility group   -
Plasmid size   95132 bp Coordinate of oriT [Strand]   12620..12664 [+]
Host baterium   Carnobacterium maltaromaticum strain 18ISCm

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA1