Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121242 |
| Name | oriT_FDAARGOS_1071|unnamed  |
| Organism | Staphylococcus pettenkoferi strain FDAARGOS_1071 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP066063 (14060..14179 [-], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..59, 61..68 (TTGGGGAT..ATCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_FDAARGOS_1071|unnamed
AGTGGCTATCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATTATCCCCAACAAGCTGGCGCGTCTGCCATGTTAATGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTATCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATTATCCCCAACAAGCTGGCGCGTCTGCCATGTTAATGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13414 | GenBank | WP_103370213 |
| Name | Relaxase_I6I28_RS11825_FDAARGOS_1071|unnamed |
UniProt ID | _ |
| Length | 336 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38492.36 Da Isoelectric Point: 7.0690
>WP_103370213.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus pettenkoferi]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVMNSIDLETGKKFNNNKQALRNVRNFNDEVCIEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMNEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDIEFQPKRPTSSRDEATERDTGVTQAD
WEQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRDHGLEI
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVMNSIDLETGKKFNNNKQALRNVRNFNDEVCIEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMNEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDIEFQPKRPTSSRDEATERDTGVTQAD
WEQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRDHGLEI
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 21670 | GenBank | NZ_CP066063 |
| Plasmid name | FDAARGOS_1071|unnamed | Incompatibility group | - |
| Plasmid size | 44233 bp | Coordinate of oriT [Strand] | 14060..14179 [-] |
| Host baterium | Staphylococcus pettenkoferi strain FDAARGOS_1071 |
Cargo genes
| Drug resistance gene | vga(A) |
| Virulence gene | - |
| Metal resistance gene | arsR, arsB, arsC |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |