Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121220
• Name: oriT_pF03-1
• Organism: Lactiplantibacillus pentosus strain F03
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_KJ868088 (2079..2113 [+], 35 nt)
• oriT length: 35 nt
• IRs (inverted repeats): 18..24, 29..35 (AGTATAG..CTATACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 35 nt

>oriT_pF03-1
CACACTTTGCGAAGTAAAGTATAGTGGGCTATACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_HTC76_RS00025_pF03-1

• ID: 13403
• GenBank: WP_176703113
• Name: mobV_HTC76_RS00025_pF03-1
• UniProt ID: _
• Length: 361 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 361 a.a.
• Molecular weight: 41824.22 Da
• Isoelectric Point: 9.3490

>WP_176703113.1 MobV family relaxase [Lactiplantibacillus pentosus]
MSFVVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTNNFKTDIEAYINENKASKR
AVRKDAVLVNEWILTSDKGFFEQLDEADTRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQRIQEELPQYLKENGFEVERGNKNKERKNLSVPEYKAMREDLKKIETEKQETQ
AKLADTQKQLDEIKPRDNKKIASKPTLLNKNKVTVDKSDLTDLEQRAVTSDVYNLEAIRLKVDNRSLRNE
LSEAKGQNYELKKENERLHKLVGTLQNIVRNVDEFLNKKLGINLPDKWLERAGLKEPSKKAPESSQKLDM
HKSNELGGPHL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 21648
• GenBank: NZ_KJ868088
• Plasmid name: pF03-1
• Incompatibility group: -
• Plasmid size: 3282 bp
• Coordinate of oriT [Strand]: 2079..2113 [+]
• Host baterium: Lactiplantibacillus pentosus strain F03

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -