Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121219 |
| Name | oriT_acrlg|unnamed1  |
| Organism | Staphylococcus hominis strain acrlg |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP090012 (23666..23758 [+], 93 nt) |
| oriT length | 93 nt |
| IRs (inverted repeats) | 28..33, 43..48 (TGCTTT..AAAGCA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 93 nt
>oriT_acrlg|unnamed1
TGCGGAAACTTTAAATATGAGTGTGCCTGCTTTCGTAAAGAAAAAGCACAAGGTAGTCGATTGGTCGTACCAAAATTTGATAAAAAAACGCGA
TGCGGAAACTTTAAATATGAGTGTGCCTGCTTTCGTAAAGAAAAAGCACAAGGTAGTCGATTGGTCGTACCAAAATTTGATAAAAAAACGCGA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13402 | GenBank | WP_242267375 |
| Name | MobA_MobL_FH100_RS11135_acrlg|unnamed1 |
UniProt ID | _ |
| Length | 640 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 640 a.a. Molecular weight: 76659.48 Da Isoelectric Point: 8.0664
>WP_242267375.1 MobA/MobL family protein [Staphylococcus hominis]
MEKGYFMLRVTNINRATKNIVASASYRSDEALYSERTDEKIKFRNHIVKPESMILTPQHAPEWTKDRQRL
WNEVDKVEKHNAKTKNPRLAKEVLLSLPNDFDREVQTELTKDFIKSEFVDKGMVADISIHRDDMNNPHAH
VLLTQRPFNSDGTWGKKTKTRTQYDENGNAILNKNGNKVRKQERFADFDFKEVRKHWELKLNQYSEREQS
LRRYDSRSFEAQGLEKIAEIPLTREEYRLEQNEKKRCEKEGIEYQPVTYYGQKNEQIRRYNRGEVSQLFS
DKEKEQAQNEIRLFIQNANNQVSENEQSYSILFDRYKHDVGYSEAKETIKNTFDSASTFGRKIQNDLLKN
EIKRRQLKFYADNYDTNYQFRREVENKGYSQQEFINTVKSNFKELLNEKNKLESREEKRKEIYQSAKDVY
LTEIDKNNLIVQQMYPKSHYHFSNDEKAFIVDEAQKGNIIKASNVQYLFKQSNNIPTDVLLEDTYKKTSK
DIFFSERHLKNLEKDSFEYNVELQFIKEKEKEIDSYKEHIDDDLRIDIGDKNFEKVKDQTPNEKVQLLIK
LEKYNNVDQEEVIEKHINQVDRNDNDNRIEHENEPSNHIHLPTINASDFLMYYANETEKQNNINHKKKKK
KQDRNNQMRR
MEKGYFMLRVTNINRATKNIVASASYRSDEALYSERTDEKIKFRNHIVKPESMILTPQHAPEWTKDRQRL
WNEVDKVEKHNAKTKNPRLAKEVLLSLPNDFDREVQTELTKDFIKSEFVDKGMVADISIHRDDMNNPHAH
VLLTQRPFNSDGTWGKKTKTRTQYDENGNAILNKNGNKVRKQERFADFDFKEVRKHWELKLNQYSEREQS
LRRYDSRSFEAQGLEKIAEIPLTREEYRLEQNEKKRCEKEGIEYQPVTYYGQKNEQIRRYNRGEVSQLFS
DKEKEQAQNEIRLFIQNANNQVSENEQSYSILFDRYKHDVGYSEAKETIKNTFDSASTFGRKIQNDLLKN
EIKRRQLKFYADNYDTNYQFRREVENKGYSQQEFINTVKSNFKELLNEKNKLESREEKRKEIYQSAKDVY
LTEIDKNNLIVQQMYPKSHYHFSNDEKAFIVDEAQKGNIIKASNVQYLFKQSNNIPTDVLLEDTYKKTSK
DIFFSERHLKNLEKDSFEYNVELQFIKEKEKEIDSYKEHIDDDLRIDIGDKNFEKVKDQTPNEKVQLLIK
LEKYNNVDQEEVIEKHINQVDRNDNDNRIEHENEPSNHIHLPTINASDFLMYYANETEKQNNINHKKKKK
KQDRNNQMRR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 21647 | GenBank | NZ_CP090012 |
| Plasmid name | acrlg|unnamed1 | Incompatibility group | - |
| Plasmid size | 35196 bp | Coordinate of oriT [Strand] | 23666..23758 [+] |
| Host baterium | Staphylococcus hominis strain acrlg |
Cargo genes
| Drug resistance gene | msr(A), fosB |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |