Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   121190
Name   oriT_M62.3|unnamed3 in_silico
Organism   Staphylococcus haemolyticus strain M62.3
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP143644 (3942..4062 [+], 121 nt)
oriT length   121 nt
IRs (inverted repeats)      53..59, 63..69  (TTGGGGA..TCCCCAA)
 23..29, 36..42  (ATTTTTT..AAAAAAT)
 24..30, 34..40  (TTTTTTC..GAAAAAA)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 121 nt

>oriT_M62.3|unnamed3
AGTGGCTAGCAATTAGACACTTATTTTTTCGCAGAAAAAAATCCTAAGGGGCTTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCACGTATGTGGCTAGCAAAGCCAATGCTTGCCAAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   13377 GenBank   WP_002449125
Name   Relaxase_U4D55_RS12555_M62.3|unnamed3 insolico UniProt ID   A0A930UG02
Length   321 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 321 a.a.        Molecular weight: 37378.14 Da        Isoelectric Point: 6.8290

>WP_002449125.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Bacteria]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEICREHGL
SVPERDTAKLRYTQAEKALIEKDQYSWKDDLREKIENAKDHTSDFKSFSEHLEKSGIEFKVRGKNVSYKP
ENVNKWVRGKTLGEDYDKGALEYEFERREREEEKESERDAVAAYTDQFEVDWDAVEHNTEQLRKTRIRRT
EKTKQAHHQVSNRDTREPERTRERTKTTHIEFDRGDEGFSR

  Protein domains


Predicted by InterproScan.

(9-238)


  Protein structure



No available structure.




Host bacterium


ID   21618 GenBank   NZ_CP143644
Plasmid name   M62.3|unnamed3 Incompatibility group   -
Plasmid size   6056 bp Coordinate of oriT [Strand]   3942..4062 [+]
Host baterium   Staphylococcus haemolyticus strain M62.3

Cargo genes


Drug resistance gene   vga(A)LC
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -