Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121190 |
| Name | oriT_M62.3|unnamed3  |
| Organism | Staphylococcus haemolyticus strain M62.3 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP143644 (3942..4062 [+], 121 nt) |
| oriT length | 121 nt |
| IRs (inverted repeats) | 53..59, 63..69 (TTGGGGA..TCCCCAA) 23..29, 36..42 (ATTTTTT..AAAAAAT) 24..30, 34..40 (TTTTTTC..GAAAAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 121 nt
>oriT_M62.3|unnamed3
AGTGGCTAGCAATTAGACACTTATTTTTTCGCAGAAAAAAATCCTAAGGGGCTTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCACGTATGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTAGCAATTAGACACTTATTTTTTCGCAGAAAAAAATCCTAAGGGGCTTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCACGTATGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13377 | GenBank | WP_002449125 |
| Name | Relaxase_U4D55_RS12555_M62.3|unnamed3 |
UniProt ID | A0A930UG02 |
| Length | 321 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 321 a.a. Molecular weight: 37378.14 Da Isoelectric Point: 6.8290
>WP_002449125.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Bacteria]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEICREHGL
SVPERDTAKLRYTQAEKALIEKDQYSWKDDLREKIENAKDHTSDFKSFSEHLEKSGIEFKVRGKNVSYKP
ENVNKWVRGKTLGEDYDKGALEYEFERREREEEKESERDAVAAYTDQFEVDWDAVEHNTEQLRKTRIRRT
EKTKQAHHQVSNRDTREPERTRERTKTTHIEFDRGDEGFSR
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEICREHGL
SVPERDTAKLRYTQAEKALIEKDQYSWKDDLREKIENAKDHTSDFKSFSEHLEKSGIEFKVRGKNVSYKP
ENVNKWVRGKTLGEDYDKGALEYEFERREREEEKESERDAVAAYTDQFEVDWDAVEHNTEQLRKTRIRRT
EKTKQAHHQVSNRDTREPERTRERTKTTHIEFDRGDEGFSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 21618 | GenBank | NZ_CP143644 |
| Plasmid name | M62.3|unnamed3 | Incompatibility group | - |
| Plasmid size | 6056 bp | Coordinate of oriT [Strand] | 3942..4062 [+] |
| Host baterium | Staphylococcus haemolyticus strain M62.3 |
Cargo genes
| Drug resistance gene | vga(A)LC |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |