Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 121190 |
Name | oriT_M62.3|unnamed3 |
Organism | Staphylococcus haemolyticus strain M62.3 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP143644 (3942..4062 [+], 121 nt) |
oriT length | 121 nt |
IRs (inverted repeats) | 53..59, 63..69 (TTGGGGA..TCCCCAA) 23..29, 36..42 (ATTTTTT..AAAAAAT) 24..30, 34..40 (TTTTTTC..GAAAAAA) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 121 nt
>oriT_M62.3|unnamed3
AGTGGCTAGCAATTAGACACTTATTTTTTCGCAGAAAAAAATCCTAAGGGGCTTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCACGTATGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTAGCAATTAGACACTTATTTTTTCGCAGAAAAAAATCCTAAGGGGCTTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCACGTATGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 13377 | GenBank | WP_002449125 |
Name | Relaxase_U4D55_RS12555_M62.3|unnamed3 | UniProt ID | A0A930UG02 |
Length | 321 a.a. | PDB ID | |
Note | Predicted by oriTfinder 2.0 |
Relaxase protein sequence
Download Length: 321 a.a. Molecular weight: 37378.14 Da Isoelectric Point: 6.8290
>WP_002449125.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Bacteria]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEICREHGL
SVPERDTAKLRYTQAEKALIEKDQYSWKDDLREKIENAKDHTSDFKSFSEHLEKSGIEFKVRGKNVSYKP
ENVNKWVRGKTLGEDYDKGALEYEFERREREEEKESERDAVAAYTDQFEVDWDAVEHNTEQLRKTRIRRT
EKTKQAHHQVSNRDTREPERTRERTKTTHIEFDRGDEGFSR
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEICREHGL
SVPERDTAKLRYTQAEKALIEKDQYSWKDDLREKIENAKDHTSDFKSFSEHLEKSGIEFKVRGKNVSYKP
ENVNKWVRGKTLGEDYDKGALEYEFERREREEEKESERDAVAAYTDQFEVDWDAVEHNTEQLRKTRIRRT
EKTKQAHHQVSNRDTREPERTRERTKTTHIEFDRGDEGFSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
ID | 21618 | GenBank | NZ_CP143644 |
Plasmid name | M62.3|unnamed3 | Incompatibility group | - |
Plasmid size | 6056 bp | Coordinate of oriT [Strand] | 3942..4062 [+] |
Host baterium | Staphylococcus haemolyticus strain M62.3 |
Cargo genes
Drug resistance gene | vga(A)LC |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |