Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121175
Name   oriT_pISP4 in_silico
Organism   Sphingomonas sp. MM-1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_020563 (30640..30656 [+], 17 nt)
oriT length   17 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 17 nt

>oriT_pISP4
ATGTATAAGCGCGCACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13369 GenBank   WP_015460623
Name   traA_G432_RS21975_pISP4 insolico UniProt ID   M4S8C6
Length   1044 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 1044 a.a.        Molecular weight: 114619.43 Da        Isoelectric Point: 6.9679

>WP_015460623.1 MULTISPECIES: Ti-type conjugative transfer relaxase TraA [Sphingomonadaceae]
MAIYHFSAKVISRANGSSAVASAAYRAAERLHDDRLGRDHDFSNKAGVVHSEILAPEGAPERLNDRATLW
NEVEAGEKRKDAQLAREVEFSIPRELNQQQGIQLARDFVEKQFVERGMVADMNVHWDMGKDGQPKPHAHV
MLSMREVGPEGFGQKVREWNSTALLQEWRVAWADHVNERLAELDIDARIDHRTLEAQGIDLEPQHKIGPA
ASRMPEQGLEAERVEDHARIARENGEKIIARPEIALDAIARQQATFTRRDLAQFAFRHSDGKDQFDQVMS
AVRSSPELVALGRDGKGEDRFTSRDMIAAEQRLERAAEGLAIDRGHGVADAHVTRALASAEGRGLDLSAE
QRGALAHITGDKGLASVVGYAGSGKSAMLGVAREAWEAQGYQVRGAALSGIAAENLEGGSAIASRTIASM
EYQWEQGRELLGPRDVLVIDEAGMIGTRQMECVLSHAEQAGAKVVLVGDPEQLQAIEAGAAFRAVTERHG
WAEITEIRRQCEDWQRDATKALATGRAGEAIHAYEAHGMVQAAETRELARADLVDRWDAERIAAPDQSRI
ILTHTNAEVRDLNLAARDRLRDAGELGPDVRVSAERGARDFATGDRIMFLKNERGLGVRNGTLGKVEQVS
PERMAVKLDDGRSVAFDLKDYAHVDHGYAATIHKSQGVTVDRAHVLATPGMDRHSAYVALSRHRDGVQLH
YGRDDFGDDRRLVRTLSRERAKDMASDYGRDRDAEIRAFADRRGLSGEIRLPERAERSPVEILGPRAGTM
RQMGEDPRTVRDAGDRGAGAGQAAAERQPRRGMFDGFRPAPQRPAPESTPAGEREKAAPKRGMFDGLKLS
AAPLKGAERAPVPADRGQGRDYARAVERASRSAEAVLQARASGAPVLEHQKVALERTTQALDQIRPGASR
DLASAMQRDPALLREAAAGRSGPMIEAMAQEARVRADPNLRADRFVERWQGLKQERDRLYRAGDMAGRER
TGKEMAGMAKSLERDPQVELVLRNRTRELGLEIGMGRGRGMNSGDLGRELARDLGIGMGRGMSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-215)

AAA domain (AAA_30)

(347-534)


  Protein structure


Source ID Structure
AlphaFold DB M4S8C6


Host bacterium

ID   21603 GenBank   NC_020563
Plasmid name   pISP4 Incompatibility group   -
Plasmid size   33183 bp Coordinate of oriT [Strand]   30640..30656 [+]
Host baterium   Sphingomonas sp. MM-1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   linC, LinB
Symbiosis gene   -
Anti-CRISPR   -