Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121146
• Name: oriT_HB18|unnamed
• Organism: Streptococcus suis strain HB18
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP141825 (2511..2544 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: 23..24
• Conserved sequence flanking the nic site: GTGTGTTATA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_HB18|unnamed
TTTACGAAGTAAAGTATAGTGTGTTATACTTTAC

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_VF946_RS11640_HB18|unnamed

• ID: 13350
• GenBank: WP_044676333
• Name: mobV_VF946_RS11640_HB18|unnamed
• UniProt ID: _
• Length: 499 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 499 a.a.
• Molecular weight: 58799.74 Da
• Isoelectric Point: 6.2759

>WP_044676333.1 MobV family relaxase [Streptococcus suis]
MSYMVARMQKMKASNLGGAYKHNERVFETHSNKDIDTSRSHLNYELTDRDRKLSYEKQIKNYVNENKLSE
RAIRKDAVLCDEWIITSDKQFFEDLTPELTKDFFETAKNYFVENYGKDNIAYASVHMDENTPHMHMGVVP
FQNGKLSSKAMFDREELKKIQDELPKYMSEHGFELERGELNSEAKHKTVAEFKQDMARKELEQELILNYG
TPEYINNLGEFVTKKEFQEAYETFQNNLGSLFEDSNFSWRETTFREKMDWVKLHQQEELQKLEDSRKPLE
DEIRALKEVIREKYKELDRIDLRASESLSELSKAEEYINTLENHSKGLETKIERLEHNSLLLEKQYAQLV
DLKIMSEKDLADIQPKKGLFGKEYVELTTEQFEELKGLIYRSRTVIHQKEIENAQLRRLVPLRASKNSFD
DSLERAKEKTKGESIERLKNEIKGLKNENSILRQQNDKMFSKLKELMPDKALNNFISELKSIKPIVKIVK
RVIEKGLGL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 21574
• GenBank: NZ_CP141825
• Plasmid name: HB18|unnamed
• Incompatibility group: -
• Plasmid size: 5012 bp
• Coordinate of oriT [Strand]: 2511..2544 [+]
• Host baterium: Streptococcus suis strain HB18

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -