Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121092
Name   oriT_pCM59 in_silico
Organism   Pediococcus pentosaceus strain VHProbi M59
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP142776 (1013..1037 [+], 25 nt)
oriT length   25 nt
IRs (inverted repeats)      1..9, 16..24  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 25 nt

>oriT_pCM59
TAAAGTATAGCGGGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13318 GenBank   WP_329504113
Name   mobV_VSX74_RS09295_pCM59 insolico UniProt ID   _
Length   361 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 361 a.a.        Molecular weight: 41958.17 Da        Isoelectric Point: 7.3342

>WP_329504113.1 MobV family relaxase [Pediococcus pentosaceus]
MSFAVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWILTSDKDFFEQLDEAETRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQRIQEELPQYLKENGFDVERGNKNKERKNLSVPEYKAMREDLKKIETEKQETQ
AKLADTKKQLDEIKPRDNKKIASKPTLLNKNKVTVDKNDLADLEQRAVTSDAYNLERIHLEVENHSLRND
LSEVKGRNYELKKENERLQKLVGTLQGIIRNVDEFLHKKLGINLPDKWLERAGLKEPSQDALKSSQEHSK
NKSEEIQGPHL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   21520 GenBank   NZ_CP142776
Plasmid name   pCM59 Incompatibility group   -
Plasmid size   3915 bp Coordinate of oriT [Strand]   1013..1037 [+]
Host baterium   Pediococcus pentosaceus strain VHProbi M59

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -