Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121064
• Name: oriT_FDAARGOS_1150|unnamed1
• Organism: Staphylococcus equorum strain FDAARGOS_1150
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP068064 (5888..5988 [-], 101 nt)
• oriT length: 101 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 101 nt

>oriT_FDAARGOS_1150|unnamed1
TCTTCTGCCGAAACTTTGAATATGAGTGTGCCGACTTTCGTTAAGAAAAAGGCACATGGGAGTCGATTGGTAGCGCCCAAATTAGATAAAGAGACGCGACA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_I6J07_RS13605_FDAARGOS_1150|unnamed1

• ID: 13299
• GenBank: WP_103169964
• Name: Relaxase_I6J07_RS13605_FDAARGOS_1150|unnamed1
• UniProt ID: _
• Length: 319 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 319 a.a.
• Molecular weight: 36793.84 Da
• Isoelectric Point: 8.5821

>WP_103169964.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus equorum]
MATTKLGNTKSASRAINYAEKRAEEKSGLNCDVDYAKSAFKATRSLYGKEDGIQAHTVIQSFKPGEVTPE
QCNQIGLELAEKIAPNHQVAVYTHTDKNHYHNHIVINSIDLDTGKKYQSNKKQREFVKQANDTLCHEHGL
SVPEKQRETRYTQAEYEIGKEAQKGNKPIPWKEQIRMVIDQTQATNHEELNQDLLQNGMKIDRITEKTIT
YKHLEEDKKVRGSKLGEKYDKGGLEHGYDGRIKSRKQENTRETGPDRKATQSEWDNFADNTRKLEHDRRS
SEAARLSHEKSLRDKEERERERKESQSIVRESKGFDLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (8-238)

Protein structure

No available structure.

Host bacterium

• ID: 21492
• GenBank: NZ_CP068064
• Plasmid name: FDAARGOS_1150|unnamed1
• Incompatibility group: -
• Plasmid size: 8357 bp
• Coordinate of oriT [Strand]: 5888..5988 [-]
• Host baterium: Staphylococcus equorum strain FDAARGOS_1150

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -