Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121000
Name   oriT_pNDM-WS1 in_silico
Organism   Acinetobacter junii
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_024999 (26..49 [-], 24 nt)
oriT length   24 nt
IRs (inverted repeats)      1..7, 11..17  (GTTTCTC..GAGAAAC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 24 nt

>oriT_pNDM-WS1
GTTTCTCGGAGAGAAACGCGGAAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13249 GenBank   WP_017480453
Name   MobA_MobL_JJ817_RS00005_pNDM-WS1 insolico UniProt ID   A0A9X5M958
Length   970 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 970 a.a.        Molecular weight: 110764.85 Da        Isoelectric Point: 8.1822

>WP_017480453.1 MULTISPECIES: AAA family ATPase [Gammaproteobacteria]
MAIYHLSVKTGRQYGSTGTRGANHYAYINRDGKYKRDDLENIKSGNLPSWATDAKHFWKSADKNERINGR
VYTELEISLPRELNKEQREELVEKFVEKTLGENFTYSYAIHSPLASDGQQNPHVHLMFSERKLDGIERDE
VKHFKRYNPVNPEKGGAGKDRYFSSKMFVVDTRLEWANHVNDFCENLGIDARIDHRSFKEQGIELSSQNF
RADYVSSHKYHINENIKQVRHQNGEIIIERPSEAIKALTSNQSVFSVRELERFLMAHTDGEEQYLKAYES
VITCPDMATLYGKDKVVFSSKELVGIEESISTFIYNANEESRIQKPFNLVEKLPLNAVRVAETRTFNSEQ
EKAFYTLTSTDRITLLNGSAGTGKSYVLSAVSEAYKESDYQVYGIALQAITAKAIANDCDIPSSTIASFL
SKYDSGNLEINNKTVLILDEAGMVGSRDMQRLLMLVEKHDAQIKLVGDSYQLSAVSAGHVFANIQENLDK
KNIASLEDIQRQKHAKESDKMIQASKYLSKHEVGKAIDIYKSINMVNEYESHDLALAKTVKSWSEDSSES
KLMLAHSNSDVNELNRMARALLIKQGKLNPESVSVKNYQGDLDISIGEKIVFKQNNSQMKVSNGELAKVI
GFEKDKFNNPKAMMVQMESDSRIVRVDLKEYDQFKHGYANTIHSSQGMTVDSAYIVASENMNANLTYVAL
TRHKQNIQINYSALTFATNEKETVKTPDGKVSYDHNYKPVEREVTAFENFKKVLGRSETKEFSTDFTLVE
SKDNLMKSYLNDHRLHLENKRELFGINSKLYSLTSENKTFTKEEIVSEVRASLKSKALLGDEIVKFNGNM
NIAKGELVKLTNDLEIKTGLFKKVTFEKGTELKVIDAYKVKDKPVMKARIKNEEYEIPFNKLNLEYSDKY
FNEFKDQSKARFDSRHKTEVYTEFREQLLKQKANAPKDNLNAPNQRIKNPNTPNRNTPKY

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(43-208)

AAA domain (AAA_30)

(346-538)

Viral (Superfamily 1) RNA helicase (Viral_helicase1)

(661-709)


  Protein structure



No available structure.




Host bacterium

ID   21429 GenBank   NC_024999
Plasmid name   pNDM-WS1 Incompatibility group   -
Plasmid size   13940 bp Coordinate of oriT [Strand]   26..49 [-]
Host baterium   Acinetobacter junii

Cargo genes

Drug resistance gene   aph(3')-VI, blaNDM-1
Virulence gene   htpB
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -