Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120997
Name   oriT_9716_6_41 in_silico
Organism   Aeromonas caviae strain 9716_6_41
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LT635658 (2610..2638 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..9, 13..20  (GACTTTAC..GTAAAGTC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_9716_6_41
CGACTTTACGAAGTAAAGTCTAGTGAGTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13247 GenBank   WP_176702996
Name   mobV_HXH64_RS00025_9716_6_41 insolico UniProt ID   _
Length   336 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 37510.08 Da        Isoelectric Point: 10.4732

>WP_176702996.1 MULTISPECIES: MobV family relaxase [Aeromonas]
MAAFAIMRCKKLSGMGSVAASLKHCFRERDTPNADPERLRHNMHMAARSTDEAMGKLREKLPEKRRKDAV
LAIEYVLSASPEWWINADSGRKADFYQSSMDWLAEKYGRENILVSSIHLDEKTPHMSAFVVPITKDGRLS
AKEFIGNRTKMSNDQSSYAEAVKHLGLVRGIEGSKATHKRIKAHYNALGQQIPVPPEIGEADLKPRSSQG
EGLLGKIGLRPMIETPLGVAERLNAKFAKAFKVVAEKASESDSQRGEAVKARMALADTQKRLQALQEPFK
GLSKEQVAEVLKQAVAMQQDNQRRQQEQDLARKLEAEIRRKMAPDKGPKPSRGFGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   21426 GenBank   NZ_LT635658
Plasmid name   9716_6_41 Incompatibility group   -
Plasmid size   3484 bp Coordinate of oriT [Strand]   2610..2638 [-]
Host baterium   Aeromonas caviae strain 9716_6_41

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -