Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120993
Name   oriT_pUSA011-2 in_silico
Organism   Pseudomonas syringae USA011
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP045801 (26786..26966 [-], 181 nt)
oriT length   181 nt
IRs (inverted repeats)      80..87, 91..98  (CAAAGGGG..CCCCTTTG)
 42..47, 56..61  (AAAAAG..CTTTTT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 181 nt

>oriT_pUSA011-2
ATCTCGAATTCGCTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGTAGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCAGAGCGGGAAAGCGTTGTTGTTGTCGTTGTTGGTTGTCGTCATTCCAGGTGCCCCCAGGAGGTGATCTTGTGGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   15523 GenBank   WP_024639861
Name   t4cp2_N028_RS27160_pUSA011-2 insolico UniProt ID   _
Length   548 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 548 a.a.        Molecular weight: 61093.70 Da        Isoelectric Point: 6.1515

>WP_024639861.1 type IV secretory system conjugative DNA transfer family protein [Pseudomonas syringae]
MARAKSKPISPTNPQKRIEEHPAFLLGKHPTEDSFLASYGQQFVMLAAPPGTGKGVGAVIPNLLSYPDSM
VVNDPKFENWEITSGFRAAAGHKVYRFSPERLETHRWNPLSAINRDPLYRLGEIRTIARVLFVSDNPKNQ
EWYNKAGNVFTAVLLFLMETPEMPFTLPQAYEIGSLGTGMGTWAQQIIELRSTGPNALSFEALRELNGVF
EASKNKSSGWSTTVDIVRDVLSVYAEKTVAWAVSGDDIDLSKAREEKMTAYFSVTEGSLKKYGPLMNLFF
TQAIRLNSKVIPEQGGHCADGTLRYKYQLALLMDELAIMGRIEIMETAPALTRGAGLRFFLIFQGKDQVR
AIYGEEAANAIMKAIHNEIVFAPGDIELAKEYSTRLGDTTVRVHNQSLNRQKHEIGARGQTDSYSEQPRP
LMLAQDINELPYDKELIFVQGTKTTPALKILARKIFYYEEEVFKSRANMRPPPLPVGDASKIDALTVPVR
TIEAKVAVADAKPMQAEQRQRWNPRDTNAQAAEVDKAQLVEVEPDPEPVLADDTSEPM

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(15-468)

  Protein structure



No available structure.




Host bacterium

ID   21422 GenBank   NZ_CP045801
Plasmid name   pUSA011-2 Incompatibility group   -
Plasmid size   43372 bp Coordinate of oriT [Strand]   26786..26966 [-]
Host baterium   Pseudomonas syringae USA011

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -