Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 120991 |
| Name | oriT_p4_tig6  |
| Organism | Pseudomonas amygdali pv. morsprunorum strain R15244 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP026561 (1301..1515 [+], 215 nt) |
| oriT length | 215 nt |
| IRs (inverted repeats) | 115..122, 126..133 (CAAAGGGG..CCCCTTTG) 77..82, 91..96 (AAAAAG..CTTTTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 215 nt
>oriT_p4_tig6
TGCAGTGTGCACTTGTCTTCTGGAGCCGTACTCGAAATCCGAATTCGCAAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGTAGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCAGAGCGGGAAAGCGTTGTCGTTGTCGTTGTTGGTTGTCGTCATTCAGGTGCCCTCAGGAGGTGATCTTGTGGC
TGCAGTGTGCACTTGTCTTCTGGAGCCGTACTCGAAATCCGAATTCGCAAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGTAGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCAGAGCGGGAAAGCGTTGTCGTTGTCGTTGTTGGTTGTCGTCATTCAGGTGCCCTCAGGAGGTGATCTTGTGGC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 21420 | GenBank | NZ_CP026561 |
| Plasmid name | p4_tig6 | Incompatibility group | - |
| Plasmid size | 40810 bp | Coordinate of oriT [Strand] | 1301..1515 [+] |
| Host baterium | Pseudomonas amygdali pv. morsprunorum strain R15244 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |