Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 120988
• Name: oriT_T808|p3
• Organism: Pararhizobium qamdonense strain T808
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP119568 (109660..109720 [+], 61 nt)
• oriT length: 61 nt
• IRs (inverted repeats): 22..27, 32..37 (CGTCGC..GCGACG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 61 nt

>oriT_T808|p3
GGATCCAAGTGCGCAATTATACGTCGCTGACGCGACGCCCTGCGTAGGGGCCTAAAGAGGG

oriT secondary structure

Predicted by RNAfold.

Relaxase

traA_PYR65_RS25890_T808|p3

• ID: 13242
• GenBank: WP_276122189
• Name: traA_PYR65_RS25890_T808|p3
• UniProt ID: _
• Length: 1100 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 1100 a.a.
• Molecular weight: 123784.49 Da
• Isoelectric Point: 9.8664

>WP_276122189.1 Ti-type conjugative transfer relaxase TraA [Pararhizobium qamdonense]
MAIAHFSASIVSRGGGRSVVLSAAYRHCAKMEYEREARTIDYTRKEGLLHEEFVLPADAPKWVRAMIADR
SVAGASEAFWNKVEAFEKRSDAQLARDLTIALPLELSTEQNIALVRDFVEKHVLAKGMVADWVYHDNPGN
PHIHLMTTLRPLTEDGFGSKKVAVVGEDGQLVRTKSGKILYDLWAGSTDDFNVLRDGWFERLNHHLALGG
IDLKIDGRSYEKQGIELEPTIHLGVGAKAIERKAQEQGVRPELERIELNEERRSENVRRILRNPAIVLDL
ITREKSVFNERDVAKVLHRYVDDPTVFQKLMLRIILNPEVLRLQRDTIAFATGEKVPARYSTRAMIRLEA
TMVRQAIWLSNRDGHPVSEAALAATFRRHERLSDEQKTAIERIAGPARIAAVVGRAGAGKTTMMKAAREA
WELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWNRGRDVLDDKTVFVLDEAGMVASKQMAGFVD
AVVRAGAKIVLAGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWMRRASLDLARGNVEKALTAYD
ANVRITVTRLKAEAVERLIGDWNHDYDQTKTTLILAHLRRDVRMLNIMAREKFVERGIVGEGHVFKTADG
IRQFDAGDQIVFLKNEGSLGVKNGMIAHVVEAAPNRIVAVIGEGDQRRQVIVEQRFYSNLDHGYATTIHK
SQGATVDRVKVLASLSLDRHLTYVAMTRHREDLQLYYGRRSFAFNGGLSKVLSRKNAKETTLDYERGRLY
REALRYAENRGLNILQVARTLLRDQLDWTLRQKTKLVDLGQRLANFAERLGLHHPPKTQTIKEAAPMVAG
IKTFPGSVADTAWNKLDTDPALKKQWEEVSARFSYVFADPETAFRAMNFDAVLVDKETAKLALQTLTTAP
ASIGPLRGKTGVLASRTEREDRRVADLNVPALKRDLEQYLRMRETAVQRLQADEQVLRQRVSVDIPALSP
AAHLVLERVRDAIDRNDLPAAMAYALSNRETKLEIDGFNQAVTERFGERTMLTNAAREPSGKLFDKLSEG
MQPEQKERLKEAWPIMRTSQQLAAHERTVQTLRQAEDLRLSQRQTPVMKQ

Protein domains

Predicted by InterproScan.

• Viral (Superfamily 1) RNA helicase (Viral_helicase1) (692-736)

• AAA domain (AAA_30) (382-568)

• BID domain of Bartonella effector protein (Bep) (Bep_C_terminal) (855-951)

• MobA/MobL family (MobA_MobL) (17-243)

Protein structure

No available structure.

Host bacterium

• ID: 21417
• GenBank: NZ_CP119568
• Plasmid name: T808|p3
• Incompatibility group: -
• Plasmid size: 615005 bp
• Coordinate of oriT [Strand]: 109660..109720 [+]
• Host baterium: Pararhizobium qamdonense strain T808

Cargo genes

• Drug resistance gene: -
• Virulence gene: katA
• Metal resistance gene: yfeC
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -