Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 120955
• Name: oriT_pSE45A5-5
• Organism: Staphylococcus epidermidis strain 45A5
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP090920 (1883..2003 [+], 121 nt)
• oriT length: 121 nt
• IRs (inverted repeats): 53..59, 63..69 (TTGGGGA..TCCCCAA) 24..30, 35..41 (TTTTTGC..GCAAAAA) 1..8, 14..21 (AGTGGCTA..TAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 121 nt

>oriT_pSE45A5-5
AGTGGCTAGCAATTAGCCACTCTTTTTTGCGTAAGCAAAAATCATAAGGGGCTTGGGGAATATCCCCAACAAGCTGGCGCGTCTGCCACGTCAGTGGCTAGCAAAGCCAGTGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_KB229_RS12640_pSE45A5-5

• ID: 13227
• GenBank: WP_002489811
• Name: Relaxase_KB229_RS12640_pSE45A5-5
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 39032.98 Da
• Isoelectric Point: 7.9179

>WP_002489811.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKATRELYGKTDDNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKMAPNHQVTVYTHNDTDHVHNHIVINAIDLETGKKFNNNKQTLRDLRDFNDEVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLKQYGITIERVTPKSI
TYRHLAENKKVRGRKLGEDYNKGGIQHGFERQIQQRQQQKYESNTNFQPKRSTSNRHESTERDTDVTQSD
WNQFAQDTNELERRRQAAESARLVDEKARRDREKRVREKQASRPIINNDRDHDLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 21384
• GenBank: NZ_CP090920
• Plasmid name: pSE45A5-5
• Incompatibility group: -
• Plasmid size: 5815 bp
• Coordinate of oriT [Strand]: 1883..2003 [+]
• Host baterium: Staphylococcus epidermidis strain 45A5

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -