Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 120950
• Name: oriT_pSEBC1190-4
• Organism: Staphylococcus epidermidis strain BC1190
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP090997 (2407..2527 [-], 121 nt)
• oriT length: 121 nt
• IRs (inverted repeats): 53..59, 63..69 (TTGGGGA..TCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 121 nt

>oriT_pSEBC1190-4
AGTGGCTAGCAATTAGCCACTATTTTTTCGTTAGAAAAAATCCATAAGGGGCTTGGGGACAATCCCCAACAAGCTGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_KB234_RS12125_pSEBC1190-4

• ID: 13222
• GenBank: WP_235063572
• Name: Relaxase_KB234_RS12125_pSEBC1190-4
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 39018.95 Da
• Isoelectric Point: 7.9179

>WP_235063572.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKATRELYGKTDDNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKMAPNHQVTVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRDLRDFNDEVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLKQYGITIERVTPKSI
TYRHLAENKKVRGRKLGEDYNKGGIQHGFERQIQQRQQQKYESNTNFQPKRSTSNRHESTERDTDVTQSD
WNQFAQDTNELERRRQAAESARLVDEKARRDREKRVREKQASRPIINNDRDHDLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 21379
• GenBank: NZ_CP090997
• Plasmid name: pSEBC1190-4
• Incompatibility group: -
• Plasmid size: 7169 bp
• Coordinate of oriT [Strand]: 2407..2527 [-]
• Host baterium: Staphylococcus epidermidis strain BC1190

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -