Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 120947 |
| Name | oriT_Cap 100.1|unnamed2  |
| Organism | Staphylococcus warneri strain Cap 100.1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP049804 (1748..1772 [-], 25 nt) |
| oriT length | 25 nt |
| IRs (inverted repeats) | 2..7, 20..25 (TAAAGT..ACTTTA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 25 nt
>oriT_Cap 100.1|unnamed2
ATAAAGTCTAGTATGTTATACTTTA
ATAAAGTCTAGTATGTTATACTTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13219 | GenBank | WP_216505248 |
| Name | mobV_G9P47_RS12160_Cap 100.1|unnamed2 |
UniProt ID | _ |
| Length | 544 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 544 a.a. Molecular weight: 64149.64 Da Isoelectric Point: 4.7522
>WP_216505248.1 MobV family relaxase [Staphylococcus warneri]
MSYSIIRVEKIKSSVNTTGIQKHVQRENNNYGNEDIQQELTQENYDLVNEEPINFNDEIEKKIEERYTVN
RAIRKDAVKHIDGIVTTDKDYFDDLTLEQTRDYFNDSLDFIKDEYGEENILYATVHMDETTPHMHFGVVP
ITDDGRLSAKKMLGNKKAFTDFQNRYNEHMNRRGYNLERGESKHITGAKHEEMNVYKQKTNYHKQEMERQ
QKEVESLKDKKQNIEKEMNEQITSSKAHIDDLQNEYKELGEMYKKDKKRLEKPLNVEYEQETKVEGGLFN
KEEVQTGNVVLKESDFNELLEQSKSANRILERYEDLNNGTEMTKLRNEIDDLKQNLDKAVEFHEEDEQEI
KHLHSENKFLKQENQSLRTENKKQVEVINGVKDAFHNTMNAFEKVLGKDRFKNCVLKVDKMLNNNQTFRN
LVVGFDDKYKEVFTRNDKLNLAKENMYVSQKINVKDMDKQIVKSELETSDSLLTLEINVRDKDFKQFLEE
PDKYVVVAPVNMDDKPLLISLDNIDLDKPLEFDKDLGLGESQEIDMDLDLDLER
MSYSIIRVEKIKSSVNTTGIQKHVQRENNNYGNEDIQQELTQENYDLVNEEPINFNDEIEKKIEERYTVN
RAIRKDAVKHIDGIVTTDKDYFDDLTLEQTRDYFNDSLDFIKDEYGEENILYATVHMDETTPHMHFGVVP
ITDDGRLSAKKMLGNKKAFTDFQNRYNEHMNRRGYNLERGESKHITGAKHEEMNVYKQKTNYHKQEMERQ
QKEVESLKDKKQNIEKEMNEQITSSKAHIDDLQNEYKELGEMYKKDKKRLEKPLNVEYEQETKVEGGLFN
KEEVQTGNVVLKESDFNELLEQSKSANRILERYEDLNNGTEMTKLRNEIDDLKQNLDKAVEFHEEDEQEI
KHLHSENKFLKQENQSLRTENKKQVEVINGVKDAFHNTMNAFEKVLGKDRFKNCVLKVDKMLNNNQTFRN
LVVGFDDKYKEVFTRNDKLNLAKENMYVSQKINVKDMDKQIVKSELETSDSLLTLEINVRDKDFKQFLEE
PDKYVVVAPVNMDDKPLLISLDNIDLDKPLEFDKDLGLGESQEIDMDLDLDLER
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 21376 | GenBank | NZ_CP049804 |
| Plasmid name | Cap 100.1|unnamed2 | Incompatibility group | - |
| Plasmid size | 3919 bp | Coordinate of oriT [Strand] | 1748..1772 [-] |
| Host baterium | Staphylococcus warneri strain Cap 100.1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |