Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120923
Name   oriT_pFS39 in_silico
Organism   Glaesserella parasuis
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_021185 (2882..2919 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..6, 10..15  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pFS39
CTTTACGAAGTAAAGTATAGTGGGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13203 GenBank   WP_015063159
Name   Relaxase_HTA64_RS00010_pFS39 insolico UniProt ID   A0A7G1HN52
Length   541 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 541 a.a.        Molecular weight: 62775.66 Da        Isoelectric Point: 9.6479

>WP_015063159.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Pasteurellaceae]
MLVKFFNTGKGSARHAFDYLLNNERVKNGTAKLVKGNPDVITFLTEQRMKEPSYRGGALYTSGVLSFSPE
ESKSLTDSNLGAIIGRFEATIFPKLDITRFNIAWVLHKDKDRTELHFVIQNFDLETKKAFTPFVADRDLS
RVNQFKDKVNADFNLSDPNLVKSHYHVKGLKRLSEEQKSFYRELNKAYAQYVEERENPSFIKQAKGILSK
IMGQNEPQAHDLHSNEDKYAFLQKFITERFKGLKINRSSDKYASVDFNGSKMRLFYEKFVVKELDDAFKI
KVEQNKEKGLLPVDSGPIFAELLQSYRQAIQQAKAEKERLKRAEEEAEKERLRLVALEKQKELENKFRAI
LNGSKDVFIEKVIKKVIDQDYKTRCNELLEPTWMGTNKIHNFICYSKELSSDDLNAEMNKIKQAVEQEFG
KTRLDELEVKGFFNLQSAISKLETMQETTLVKLKDVYIDFYKKVDTARFNKFKAEVDEYKSTHRSNAVML
EYRDYATAFLNDLLPRMERSLTVSNPSVEAEKTSVYQPQPQAKPNAPKFRM

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-143)


  Protein structure


Source ID Structure
AlphaFold DB A0A7G1HN52


Host bacterium

ID   21352 GenBank   NC_021185
Plasmid name   pFS39 Incompatibility group   -
Plasmid size   7577 bp Coordinate of oriT [Strand]   2882..2919 [+]
Host baterium   Glaesserella parasuis

Cargo genes

Drug resistance gene   erm(T), blaROB-1
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -