Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120830
Name   oriT_pB-8086-2 in_silico
Organism   Yersinia aleksiciae strain SCPM-O-B-8086
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP139921 (5155..5199 [-], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pB-8086-2
GCGCACCGTTTCTGAACAAAGTAAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13140 GenBank   WP_145594230
Name   mobA_N0K21_RS20700_pB-8086-2 insolico UniProt ID   _
Length   368 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 368 a.a.        Molecular weight: 42657.31 Da        Isoelectric Point: 6.3852

>WP_145594230.1 MULTISPECIES: mobilization protein MobA [Yersiniaceae]
MASYHLSVKTGGKGNASPHADYISREGKYAREKDSDLEYKESGNMPAWAAHKPSEFWKAADTFERANGCT
YREIEIALPRELKSEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANNKEPERGGAKKVRFGETPTERKEHLVAQRERWADLQNTCLERHQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDTDQLQAILERREAERQVQQCRDERDSVIDVTTSLREALSERDTLTPKQAKPEQDAV
SGRVFDFEKEPDKLNELVSDAMKDIQEEIDLQSLVNDAMAEFQGIHQEMVRQQERAALAEKQRQQEKERQ
RIAEQKQQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   21259 GenBank   NZ_CP139921
Plasmid name   pB-8086-2 Incompatibility group   ColE10
Plasmid size   6977 bp Coordinate of oriT [Strand]   5155..5199 [-]
Host baterium   Yersinia aleksiciae strain SCPM-O-B-8086

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -