Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 120808 |
| Name | oriT_SIO|unnamed  |
| Organism | Vibrio paracholerae strain SIO |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP137090 (131567..131848 [-], 282 nt) |
| oriT length | 282 nt |
| IRs (inverted repeats) | 236..241, 253..258 (GCCAAA..TTTGGC) 76..81, 92..97 (ATCAAA..TTTGAT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 282 nt
>oriT_SIO|unnamed
GCGCTGTTTGGCGGCATTTGGCTAGTGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGGTTGGAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTTGGTTTAGGGTGAAAAAAGTGCCAAATCTTTCTTTAAGCCAGTATTGGCAAGGCCTAGCAGCGTTGGATTTCAATCGAGAAGCCAAACAGTAAATGGGTTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTATGGGGGTAAAGCCATGGGGAA
GCGCTGTTTGGCGGCATTTGGCTAGTGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGGTTGGAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTTGGTTTAGGGTGAAAAAAGTGCCAAATCTTTCTTTAAGCCAGTATTGGCAAGGCCTAGCAGCGTTGGATTTCAATCGAGAAGCCAAACAGTAAATGGGTTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTATGGGGGTAAAGCCATGGGGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 21237 | GenBank | NZ_CP137090 |
| Plasmid name | SIO|unnamed | Incompatibility group | - |
| Plasmid size | 278143 bp | Coordinate of oriT [Strand] | 131567..131848 [-] |
| Host baterium | Vibrio paracholerae strain SIO |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | wbtL, rfaD, lgtF, tufA |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA7 |