Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 120806 |
| Name | oriT_pJIR2774  |
| Organism | Clostridium perfringens 95-949 pJIR2774 lnu(P) |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NG_047929 (440..643 [+], 204 nt) |
| oriT length | 204 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 204 nt
>oriT_pJIR2774
GGTGTTGGAAAAATAGGAAATATTATGGTTTCTTGTATAAATGCTAAAAATCAAGTCTTATTTCACTTAGGGTATGAATTTGGAGAAAGTGATATTCATGATGTAAAATTATTATGTAAAGAATTTAACATTCCGATACCTAAAGAATATGAAAATTTTTAAATTAGCGATAATTATAATCTTTAGATTTAATAATATTACTAT
GGTGTTGGAAAAATAGGAAATATTATGGTTTCTTGTATAAATGCTAAAAATCAAGTCTTATTTCACTTAGGGTATGAATTTGGAGAAAGTGATATTCATGATGTAAAATTATTATGTAAAGAATTTAACATTCCGATACCTAAAGAATATGAAAATTTTTAAATTAGCGATAATTATAATCTTTAGATTTAATAATATTACTAT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 21235 | GenBank | NG_047929 |
| Plasmid name | pJIR2774 | Incompatibility group | - |
| Plasmid size | 701 bp | Coordinate of oriT [Strand] | 440..643 [+] |
| Host baterium | Clostridium perfringens 95-949 pJIR2774 lnu(P) |
Cargo genes
| Drug resistance gene | lnu(P) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |