Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120794
Name   oriT_pPM16-1 in_silico
Organism   Proteus mirabilis strain PM16
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP137337 (1943..1987 [-], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pPM16-1
GCGCACCGTTTCTAAACAAAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13112 GenBank   WP_317889142
Name   MobA_MobL_R3372_RS18190_pPM16-1 insolico UniProt ID   _
Length   369 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 369 a.a.        Molecular weight: 43011.76 Da        Isoelectric Point: 6.5108

>WP_317889142.1 MobA/MobL family protein [Proteus mirabilis]
MASYHLSVKTGGKGKAASHVDYIAREGKYAREKDNDLEHQESGNMPAWAAHKPTEFWKAADTFERANGCT
YREIEIALPRELTPVQRLELVRDFIQQEIGDRHAYQFAIHNPRAAIEGGEQPHAHIMFSERLNDGIERDP
QLYFKRANTKNPERGGAKKARFGETPTERKAYLIAQRERWADLQNKHLERYQHPDRVDARSLKAQGIERE
PERHFGAGQVRQFEPAQLHAVMERREAERQAQHCRDECNSVIDVTTTLREALAERDNVTETPKCEVMQNA
TQGRTFDFEKESDKLNALFSDAMKDIQEEIDLQSLVNDAMAEFQGIHQDMVKQQEREYWAEQRRQQEKER
QRLAEQKRQKPDDGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   21223 GenBank   NZ_CP137337
Plasmid name   pPM16-1 Incompatibility group   ColE10
Plasmid size   8178 bp Coordinate of oriT [Strand]   1943..1987 [-]
Host baterium   Proteus mirabilis strain PM16

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA7