Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 120776 |
| Name | oriT_pZ96-1_3  |
| Organism | Leclercia adecarboxylata strain Z96-1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP040894 (25074..25158 [+], 85 nt) |
| oriT length | 85 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 85 nt
>oriT_pZ96-1_3
GGGTGTCGGGGCGGAGCACTGACCAGGTGGTGTTTGTAATATCGTGCGTGCGCGGTATTACAAACACACATCCTGTCCCGTCTTT
GGGTGTCGGGGCGGAGCACTGACCAGGTGGTGTTTGTAATATCGTGCGTGCGCGGTATTACAAACACACATCCTGTCCCGTCTTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13104 | GenBank | WP_139565656 |
| Name | Relaxase_FHN83_RS27195_pZ96-1_3 |
UniProt ID | _ |
| Length | 900 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 900 a.a. Molecular weight: 102929.98 Da Isoelectric Point: 8.3026
>WP_139565656.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Enterobacteriaceae]
MIPVIPKKRKDGKSSFGDLVSYVSVRDEPQDDDLMEVIRASGTKADMPHSSRFSRLVDYATKLRDESFIS
LVDVMPDGGEWVNFYGVTCFHNCSSIESSAEEMEFTARKAKFARSKSDPVFHFILSWQSHESPRPEQIYD
SVRHSLSRLGLSGHQFVSAVHTDTDNLHVHVAVNRVHPETGYLNWLSYSQEKLSKACRELELKHGFSPDN
GCYVLAPDNRIVRRTSVERDRQSAWLHDRKPSLKEYIADTAVAGLREAPVTDWPSLHQRFAKAGLFIASD
NGELKVKDGWDRKRPGVTLSSFGYSWSTDKLICKLGEFTPPAQDIFTQVPDVGRYDPDTVTMLSRPGRMT
ETETLNEYAVSRLRAPLIALYQDPAQRTMQAVHTLLAHSGLYLKEQHDCLVICDGYDQTRTPVRAERVWP
ALTKAVMNSYEGGWQPVPHDIFRQVPPAERFAGGGLKARPVSDREWAKLRTGSGPQGALKREIFSDKESL
WSYAVSHCRQDLEALISSGKFTWERGHELLARQGLLLMREKQGLVVMDAYNHDQTPVKASHVHPDLTLVR
AEPHAGAFVRVPSDIFERVAPVSRYNPELAVSDRDIPGMKRDPELRRQRREARAAARDDLKARYSAWRAN
WQRPDLHNREHWQAIHDECRMRKARIRAQQRDPLVRKLHYHIAELQRMQALIALKESVKAERLELIGQGK
WYPPSYRQWVEVEALKGDRAAISQLRGWDYRDRRHDNTQSTSNQRCVVLCEPGSAPLYYNMPGLKPALQK
NGSVRFSDTDTGQHVCTDYGDRVVFRNGSDFASLQRELNRVSPVLFARDPKMGFAPEGNDIQFNQALAEM
VGWYNVNREGEEDQVRISRPDVDRMREQCEAFFRNAEAEQNTPAYISHEPRNDWKPPSPR
MIPVIPKKRKDGKSSFGDLVSYVSVRDEPQDDDLMEVIRASGTKADMPHSSRFSRLVDYATKLRDESFIS
LVDVMPDGGEWVNFYGVTCFHNCSSIESSAEEMEFTARKAKFARSKSDPVFHFILSWQSHESPRPEQIYD
SVRHSLSRLGLSGHQFVSAVHTDTDNLHVHVAVNRVHPETGYLNWLSYSQEKLSKACRELELKHGFSPDN
GCYVLAPDNRIVRRTSVERDRQSAWLHDRKPSLKEYIADTAVAGLREAPVTDWPSLHQRFAKAGLFIASD
NGELKVKDGWDRKRPGVTLSSFGYSWSTDKLICKLGEFTPPAQDIFTQVPDVGRYDPDTVTMLSRPGRMT
ETETLNEYAVSRLRAPLIALYQDPAQRTMQAVHTLLAHSGLYLKEQHDCLVICDGYDQTRTPVRAERVWP
ALTKAVMNSYEGGWQPVPHDIFRQVPPAERFAGGGLKARPVSDREWAKLRTGSGPQGALKREIFSDKESL
WSYAVSHCRQDLEALISSGKFTWERGHELLARQGLLLMREKQGLVVMDAYNHDQTPVKASHVHPDLTLVR
AEPHAGAFVRVPSDIFERVAPVSRYNPELAVSDRDIPGMKRDPELRRQRREARAAARDDLKARYSAWRAN
WQRPDLHNREHWQAIHDECRMRKARIRAQQRDPLVRKLHYHIAELQRMQALIALKESVKAERLELIGQGK
WYPPSYRQWVEVEALKGDRAAISQLRGWDYRDRRHDNTQSTSNQRCVVLCEPGSAPLYYNMPGLKPALQK
NGSVRFSDTDTGQHVCTDYGDRVVFRNGSDFASLQRELNRVSPVLFARDPKMGFAPEGNDIQFNQALAEM
VGWYNVNREGEEDQVRISRPDVDRMREQCEAFFRNAEAEQNTPAYISHEPRNDWKPPSPR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 7310 | GenBank | WP_269467670 |
| Name | WP_269467670_pZ96-1_3 |
UniProt ID | _ |
| Length | 61 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 61 a.a. Molecular weight: 7105.30 Da Isoelectric Point: 10.3559
>WP_269467670.1 MULTISPECIES: hypothetical protein [Enterobacteriaceae]
MNRKVIPVIDNNFLTELLRLGRLQKHHFVEGKRIGDKEYSTVLVAITELANTLRKQLMNND
MNRKVIPVIDNNFLTELLRLGRLQKHHFVEGKRIGDKEYSTVLVAITELANTLRKQLMNND
Protein domains
No domain identified.
Protein structure
No available structure.
Host bacterium
| ID | 21205 | GenBank | NZ_CP040894 |
| Plasmid name | pZ96-1_3 | Incompatibility group | - |
| Plasmid size | 75205 bp | Coordinate of oriT [Strand] | 25074..25158 [+] |
| Host baterium | Leclercia adecarboxylata strain Z96-1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | merR, merT, merP, merA, merD, merE, ncrC, nirB, silE, silS, silR, silC, silF, silB, silA, silP, pcoA, pcoB, pcoC, pcoD, pcoR, pcoS, pcoE |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |