Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120759
Name   oriT_HAMBI_1279|unnamed in_silico
Organism   Hafnia alvei strain HAMBI_1279
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP139993 (40384..40469 [+], 86 nt)
oriT length   86 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 86 nt

>oriT_HAMBI_1279|unnamed
TAAGGGACAAGATGTGTTTTGTAGCACCGCCTGCACGCAGTCGGCTCCTACAAAACGTCTTGGTCAGGGCGAAGCCCCGACACCCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13087 GenBank   WP_043495539
Name   traI_U0008_RS22020_HAMBI_1279|unnamed insolico UniProt ID   _
Length   664 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 664 a.a.        Molecular weight: 76758.24 Da        Isoelectric Point: 6.3239

>WP_043495539.1 TraI/MobA(P) family conjugative relaxase [Hafnia alvei]
MIGRIPPKRRDGKSSFLKLVSYVVIRDEDKPDMPLEPEHPDWRRPKSTDELFNRLVDYVSRSGDEGAMHT
LNIDDDGRQRVLFDGVLCETNNFSLATAAVEMNAVASQNTRCKDPVFHYILSWPTSDNPNQDEVFDSVRH
TLKSFGMDEHQYVAAIHTDTNNIHCHIAVNRVHPVTYDTADDSFTRLKLQRACRELELKYDWTPTNGCYV
VDENKQIVYKKRDEPPVPQGSVAMEYYADQESLHSYAMRTCSDDLEKLIVKDELTWFELHKLLVKQGLKL
DKKGKGLAIYSLDEKDITPIKASHLHPDLTLNCLEDDLGPFEQLEDAGRYTLDTNDEGDDALIHMYRYEP
HLHKRDEDARAARREARAVARRELFDRYKKYSNGYKRPKMEGTEATSQFKALSNRYAWKKEQVRFVFDDP
LIRKAVYRVLEAERQKEFESLKAQIKQERNAFYSHPSNRKLTKQEWVGQQALKQDQAAISCLRGWSYRYK
RDALTPPLSENAIVCAVADDTKPYNIQGYEKSVSRDGTIQYKQDGIIQIQDKGSRLEIADPYAQNGLHIA
GAMVLAVEKSGEKMLFSGDTEFVESACDLVPWFNEEGKKILPLTEPQQRVMAGYDKAEVRDDAFVATHRI
VDEETYLASLERNEVNDNRERHDLKHKKNTYRPR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(53-319)


  Protein structure



No available structure.




Host bacterium

ID   21188 GenBank   NZ_CP139993
Plasmid name   HAMBI_1279|unnamed Incompatibility group   -
Plasmid size   156209 bp Coordinate of oriT [Strand]   40384..40469 [+]
Host baterium   Hafnia alvei strain HAMBI_1279

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   pcoE, pcoS, pcoR, pcoD, pcoC, pcoB, pcoA, silP, silA, silB, silF, silC, silR, silS, silE, arsR, arsD, arsA, arsB, arsC, arsH
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA7