Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120630
Name   oriT_pMTY13189_untypable5 in_silico
Organism   Citrobacter koseri strain TUM13189
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP025646 (1815..1866 [-], 52 nt)
oriT length   52 nt
IRs (inverted repeats)      35..41, 45..51  (CACTCAA..TTGAGTG)
 7..14, 18..25  (GACTTTGC..GCAAAGTC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 52 nt

>oriT_pMTY13189_untypable5
GGTCACGACTTTGCGAAGCAAAGTCTAGTGAGTACACTCAAGTATTGAGTGG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12998 GenBank   WP_244370837
Name   mobV_MWM19_RS24605_pMTY13189_untypable5 insolico UniProt ID   _
Length   329 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 329 a.a.        Molecular weight: 36631.48 Da        Isoelectric Point: 10.4101

>WP_244370837.1 MobV family relaxase [Citrobacter koseri]
MAAYAIMRCKKLAKMGNVAASLKHAYRERETPNADASRTPDNEHRAASSTDEAVGRIRELLPDKRRKDAV
LAVEYVMTASPEWWKQASQEQQAAFFDQAHKWLADKYGADRIVTASIHRDETSPHMTAFVVPLTQDGRLS
AKEFIGNKAQMTRDQTTFAASVADLGLQRGIEGSKARHTRIQAFYEALERPPVGHVTISPQAVEPRAYAP
QGLAEKLGISKRVETPEAVADRLTKAVRQGYEPALQAAAGAREMRKKADQAQETARNLRERLKPVLDALG
PLNRDMQAKAAAIIKAVGEKLLTEQREAQRQKQAQRQQERGRDRGGYSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   21059 GenBank   NZ_AP025646
Plasmid name   pMTY13189_untypable5 Incompatibility group   -
Plasmid size   2671 bp Coordinate of oriT [Strand]   1815..1866 [-]
Host baterium   Citrobacter koseri strain TUM13189

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -