Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120615
Name   oriT_pCF2206-5 in_silico
Organism   Citrobacter freundii strain CF2206
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP110905 (5981..6025 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pCF2206-5
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12984 GenBank   WP_265970836
Name   mobA_OQY67_RS27510_pCF2206-5 insolico UniProt ID   _
Length   365 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 365 a.a.        Molecular weight: 42470.92 Da        Isoelectric Point: 6.3560

>WP_265970836.1 mobilization protein MobA [Citrobacter freundii]
MASYHLSVKTGGKGRASPHADYIAREGKYAREKDSDLEHKESGNMPAWAAHKPSEFWKAADTSERANGCT
YREIEIALPRELKPEQRLELVRDFVQQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERINDGIHRDP
EQYFKRANTKEPERGGAKKARFGETPTERKEYLVAQRERWADLQNKHLERYQHADRVDSRSLKAQGIDRE
PERHLGAGQVQRFDTEQLQAILERREAERQVQQSRDERDSVIDVTTSLREALSERDTLTLKQELKSEPEQ
ESHSGRTFDFEKEPDKLNALVSDAMKDIQEEIDLQSLVNDAMAEFQGIHQEMERQKERERQQEKERQRLA
EHTQQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   21044 GenBank   NZ_CP110905
Plasmid name   pCF2206-5 Incompatibility group   ColE10
Plasmid size   9380 bp Coordinate of oriT [Strand]   5981..6025 [+]
Host baterium   Citrobacter freundii strain CF2206

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -