Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 120446
• Name: oriT_pRHBSTW-00821_8
• Organism: Citrobacter sp. RHBSTW-00821
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP056328 (486..519 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_pRHBSTW-00821_8
ACGATTTTGCGTAGCAAAGTCTAGTGAGTACACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_HV285_RS28270_pRHBSTW-00821_8

• ID: 12875
• GenBank: WP_167593153
• Name: mobV_HV285_RS28270_pRHBSTW-00821_8
• UniProt ID: _
• Length: 338 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 338 a.a.
• Molecular weight: 38492.56 Da
• Isoelectric Point: 10.1724

>WP_167593153.1 MULTISPECIES: MobV family relaxase [Gammaproteobacteria]
MRSPDWLDVRQNEGVSMANYAIMRCKKLTGMGSVASALQHCYRERETPNADAERTPENYCSVSQSADEAM
GKLRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFAHSEQWLEKKYGKDRVVAAVVHRDEATP
HLSAFVVPLTQDGRLSAKEFIGGRSKMRDDQSTYAESVKKLGLERGIEGSRATHQTVQHYYQSINRGTRS
QVSISPDALEPRVLRKGIFTKDVEDQAAIAKRLSHAVNDGLAGTIAMASQSAQNAKRVRELQKTMDSQQK
RLQSVTEPFKGLSREQMTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (17-201)

Protein structure

No available structure.

Host bacterium

• ID: 20875
• GenBank: NZ_CP056328
• Plasmid name: pRHBSTW-00821_8
• Incompatibility group: -
• Plasmid size: 2694 bp
• Coordinate of oriT [Strand]: 486..519 [+]
• Host baterium: Citrobacter sp. RHBSTW-00821

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -