Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120441
Name   oriT_pRHBSTW-00053_3 in_silico
Organism   Citrobacter sp. RHBSTW-00053
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP056890 (4403..4447 [-], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pRHBSTW-00053_3
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12874 GenBank   WP_191233489
Name   mobA_HV045_RS27050_pRHBSTW-00053_3 insolico UniProt ID   _
Length   365 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 365 a.a.        Molecular weight: 42252.72 Da        Isoelectric Point: 6.4557

>WP_191233489.1 mobilization protein MobA [Citrobacter sp. RHBSTW-00053]
MASYHLSVKTGGKGSASPHADYISREGKYAREKDSDLEHKESGNMPAWAAHKPTEFWKAADTFERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANSKAPERGGAKKARFGETPTERKEHLVAQRERWADLQNKHLERYQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDTAQLQAILERRDAERQAEQSRDERDSVIDVTTSLREAISERDNLTIKQEQKPEPAQ
EDTSGRVFDFEKESEKLNARVSDAMKDIQEEIDLQSLVNDAMAEFQGIHQEMERLAEKQRQQEKEQQRLA
EQTRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   20870 GenBank   NZ_CP056890
Plasmid name   pRHBSTW-00053_3 Incompatibility group   ColE10
Plasmid size   10160 bp Coordinate of oriT [Strand]   4403..4447 [-]
Host baterium   Citrobacter sp. RHBSTW-00053

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -