Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120338
Name   oriT_pCM034-4 in_silico
Organism   Clostridium estertheticum strain CM034
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP086154 (3276..3300 [-], 25 nt)
oriT length   25 nt
IRs (inverted repeats)      1..9, 16..24  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 25 nt

>oriT_pCM034-4
TAAAGTATAATGTGCTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12793 GenBank   WP_226133110
Name   mobV_LL127_RS23855_pCM034-4 insolico UniProt ID   _
Length   359 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 359 a.a.        Molecular weight: 42304.32 Da        Isoelectric Point: 9.7482

>WP_226133110.1 MobV family relaxase [Clostridium estertheticum]
MSYLICHVQKFKANDVKGTQIHNQRESVNSKNKDINEDRTILNYDLHNEKHINYNHKIKEIIKDGYSVNK
GIRKDAVVMTSTLITSDNEYFKKLHHEDQEKFFKHTYEFLKDKYGEKNIVSAIVHLDETTPHMHLCSVPL
TKDGRLSAKIIFNRKALLQLQSELPMYLQDKGFDIQRGEVGSKKTHLDTQTFKLKTKQEELEKNKIEFDK
ADNELKIKSKALESLTSNISNLEQTSVKKSFIGSKITLQEVDYNKIIKLAKKGVLNEKSLNDLKRVNLSL
ERDNLNYHQMSEEHWDKYDNLNRKYKKLNSNVKDLIKENEIMTNVLEKNNLIPEFKQDLKNEKEIERISR
RKKRQDLEL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   20767 GenBank   NZ_CP086154
Plasmid name   pCM034-4 Incompatibility group   -
Plasmid size   3854 bp Coordinate of oriT [Strand]   3276..3300 [-]
Host baterium   Clostridium estertheticum strain CM034

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -