Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120278
Name   oriT_ATCC 43959|unnamed in_silico
Organism   Staphylococcus kloosii strain ATCC 43959
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP027847 (6500..6600 [+], 101 nt)
oriT length   101 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 101 nt

>oriT_ATCC 43959|unnamed
TCATCGGCCGAAACTTTGAATATGAGTGTGCCGAATTTTGTTAAGAAAAAGGCACATGGGAGTCGATTGGTAGCGCCCAAATTGGATAAAGAGACGCGACA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12756 GenBank   WP_103294780
Name   Relaxase_C7J89_RS13160_ATCC 43959|unnamed insolico UniProt ID   _
Length   315 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 315 a.a.        Molecular weight: 36300.10 Da        Isoelectric Point: 7.6267

>WP_103294780.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus kloosii]
MATTKLGNTKSASRAINYAEKRAEEKSGLNCDVDYAKSAFKQTRALYGKENGIQAHTVIQSFKPNEVTPE
QCNQLGLELAEKIAPNHQVAVYTHTDKDHYHNHIVINSVDLETGKKYQSNKKQRELVKQENDNVCREHGL
SVTERGTAKMRYTQAEKGIVFDRDEYSWKDELRDHIENAKAHTSNLETFSEHLKEKGIEVKLRGETISYK
PENANKWVRGRTLGSDYEKGAIDYEHERHQEQQREPEYADGIKVNWDVLEQHTKQLKQRRVERAQETKQA
HRKLSGRNAGESENERERTRSNNIEIERDGGGLSL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(8-238)


  Protein structure



No available structure.




Host bacterium

ID   20707 GenBank   NZ_CP027847
Plasmid name   ATCC 43959|unnamed Incompatibility group   -
Plasmid size   8847 bp Coordinate of oriT [Strand]   6500..6600 [+]
Host baterium   Staphylococcus kloosii strain ATCC 43959

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -