Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120271
Name   oriT_pAER-1351 in_silico
Organism   Aeromonas sp. ASNIH4
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP026218 (1821..1920 [-], 100 nt)
oriT length   100 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 100 nt

>oriT_pAER-1351
CATGTGTCATACAATGGCCGTCCTGTATTGCTCATCCGCTCTACTATCGTATCAGCAGTTTAGGTGCACGGGACGCACTTTGCAACAAGCACAAATGGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12750 GenBank   WP_103828300
Name   Relaxase_C2U40_RS24565_pAER-1351 insolico UniProt ID   _
Length   737 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 737 a.a.        Molecular weight: 83403.13 Da        Isoelectric Point: 8.2546

>WP_103828300.1 MULTISPECIES: LPD7 domain-containing protein [Gammaproteobacteria]
MISKHIRNPDAKAAKHRRIIKLVEYILNPQTESATEKCVYHGARGFITAERSMQLGEMIALSEDATRSKN
TVEHFVLSLREGEKPTPEQVEEMITIWLRELGLSDCQIIYGLHEDTDNYHLHIAVNRMHPERLECIKING
GFSREAEHRAIALIEHAQGWKSEKNARYTVLPDGTLAYRAENGEAVPDAGWSADLALRRRQTDDRKELRR
RHERERRELEAVEATKAQRQAALDELRTRQLAEQLAQKTQQKAERVALRSALPASRARENVAISQRAIDI
ETRTGVQSAERTAKEVAGPILRSASSWAQLHAELAAVGCRFEREGSGALIWVGDTPVKASQVCRKSSLPK
LEKRLGAYEPAPEGMVISERELEPLKPDAPRMSDYMRERRQYERERKQETAALRERHRLEQEAAWSRYEA
RRDALLAGHAGRNRYALGAVARAEWLAERDELIQRQSGERHRLRKRLPAFPGVEDWYRRLDEPGLAELWR
HRNSDQALLVGDADTPALPPRDIRAFVAEVRGRQVVFRRPDDTGPAFVDCGRRIDVTASNDRDAARAALQ
LAKAKWGRVTVSGPPEYQQMMLELAAEMGVQIANPELQERLNVEIERRRPVPVPTAKPDWSRYRSVASGG
VPSPARTTGERDPRWPQFERAMLQIGQFELGVSAVVLMGQLEIAKGTVTERLDAAERSGRSVDDVARELA
TAAARAEAEAFQRQLDAAERELARPDMHPDEPEGPGW

  Protein domains


Predicted by InterproScan.

Large polyvalent protein-associated domain 7 (LPD7)

(526-601)

Relaxase/Mobilisation nuclease domain (Relaxase)

(21-236)


  Protein structure



No available structure.




Host bacterium

ID   20700 GenBank   NZ_CP026218
Plasmid name   pAER-1351 Incompatibility group   -
Plasmid size   27298 bp Coordinate of oriT [Strand]   1821..1920 [-]
Host baterium   Aeromonas sp. ASNIH4

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -