Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120245
Name   oriT_pK285_5 in_silico
Organism   Latilactobacillus curvatus strain K285
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP141817 (1892..1928 [+], 37 nt)
oriT length   37 nt
IRs (inverted repeats)      2..9, 11..18  (ACTTTATA..TATAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 37 nt

>oriT_pK285_5
CACTTTATAATATAAAGTATAGTGGGCTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12734 GenBank   WP_324722287
Name   mobV_VDS61_RS10640_pK285_5 insolico UniProt ID   _
Length   361 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 361 a.a.        Molecular weight: 41965.26 Da        Isoelectric Point: 7.6905

>WP_324722287.1 MobV family relaxase [Latilactobacillus curvatus]
MSFAVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWIITSDKDFFEQLDEAETRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREVLQRIQEELPQYLKENGFDVQRGNKNKERKNLSVPEYKAMREELKKIETEKQETQ
AKLADTKKQLDEIKPRDTKKIASKPTLMNKNKVTVDKSDLADLEQRAVTSDAYNFEKIHLEVENHSLRND
LSEAKGRNYELRKENERLQKLVGTLQGIIRNVDEFLHKKLGINLPEKWLERAGLKEPSKKAPESSQELDR
HKSDELGGPHL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   20674 GenBank   NZ_CP141817
Plasmid name   pK285_5 Incompatibility group   -
Plasmid size   3603 bp Coordinate of oriT [Strand]   1892..1928 [+]
Host baterium   Latilactobacillus curvatus strain K285

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -