Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120243
Name   oriT_SYP-B4209|unnamed1 in_silico
Organism   Lactobacillus gasseri strain SYP-B4209
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP141797 (3219..3256 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..7, 19..25  (ACACAAC..GTTGTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_SYP-B4209|unnamed1
ACACAACCAACTTTAGTTGTTGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12733 GenBank   WP_324712800
Name   mobQ_VA644_RS09910_SYP-B4209|unnamed1 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80635.22 Da        Isoelectric Point: 9.3532

>WP_324712800.1 MobQ family relaxase [Lactobacillus gasseri]
MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIP
DRISEKSFIEQGIDDTPMQHEGINSKRYERKEFNQQVKNYRKAKASYKNNQEKVINRGHLDSLSRHFSFN
EKRVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQEGSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTIFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQADPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTRQIFLGECKVDPTIKNSQIEKIQKQLKDQQAKDDQYRKVNMGHYQPLNYKPVSPSY
YLKTAFSNAIMTALYAHDEDYERQKQARGLKEIEWAMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   20672 GenBank   NZ_CP141797
Plasmid name   SYP-B4209|unnamed1 Incompatibility group   -
Plasmid size   20957 bp Coordinate of oriT [Strand]   3219..3256 [-]
Host baterium   Lactobacillus gasseri strain SYP-B4209

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21