Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120189
Name   oriT_B3.7|unnamed in_silico
Organism   Shinella sedimenti strain B3.7
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JAKVIN010000022 (4695..4723 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      14..19, 24..29  (CGTCGC..GCGACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_B3.7|unnamed
AGGGCGCAATATACGTCGCTGGGGCGACG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12701 GenBank   WP_241605970
Name   traA_MKI86_RS23700_B3.7|unnamed insolico UniProt ID   _
Length   1539 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 1539 a.a.        Molecular weight: 169452.52 Da        Isoelectric Point: 9.8527

>WP_241605970.1 Ti-type conjugative transfer relaxase TraA [Shinella sedimenti]
MAIMFVRAQVISRGAGRSVVSAAAYRHRARMIDEQVGTTFSYRGGAGELKHEELALPEQIPAWLQTAIEG
KTVAAASEALWNAVDAFETRSDAQLARELIIALPEELTRAENIALVQEFVRDTMTSKGMIADWVYHDKDG
NPHIHLMTALRPLTEKGFGPKKVAVLGASGQPLRVVTPDRPKGKIVYKLWAGDKETMKAWKIAWAQTANR
HLALAGHDIRLDGRSYAEQGLDGIAQKHLGPEKAALARKGAAMYFAPADLARRQEMADRLLADPALLLKQ
LGNERSTFDEKDIAKALHRYVDDPTDFANIRARVMACDELVLLRLQQADRQTGTVAEPAIFTTRAALRIE
YDMAQSADNLSKRTGFKIADPTVAAAVHKVQTADREKPFKLDAEQVAAVRHVTGDSAIAVVVGLAGAGKS
TLLAAARVAWEGEGGRVFGAALAGKAAEGLEDSSGIKSRTLASWELAWENGRDLLERGNLFVIDEAGMVS
SQQMARVLKAVENAGAKAVLIGDAMQLQPIQAGAAFRAISERIGFAELSGVRRQRDAWARDASRLFARGR
VEEGLDAYAQRGRIVEAARRSDIVERITADWSAAREEAIARSRAAGRDGRLRGDEMLVLAHTNDDVKRLN
EELRGVMNAAGALTDARAFQTVRGVREFAAGDRIIFLENARFLEPRARVPGPQYVKNGMLGTVVSTGDNR
GGPLLSVRLDNGRDVVISEDSYRNVDHGYAATIHKSQGVTVDRTFVLATGMMDHHLTYVSMTRHRDQATL
YAAREDFEAKPEWGRKPRVDHAAGVTGVLVMTGTARFRPDDEDAKESPYADVRTDDGAVHRVWGVSLPNA
LEAGGVCEGDTVTLRKDGVETVTVDVVLTDPETGEKRTEKREVQRNVWTAKLAEAACVRQERIERESHRP
ELFTHMVARLGRSGAKTTTLDFESEVGYQTHVGDFARRRGIDTLAEIAARREEATVRRLAWLAEKHGQVA
TLWQRASVALGFAIEREKSLSYEDARSETIAAPVPADRSCLIPATTRFDHSLEEDARRAQLASHRWRERE
AVLRPVLEKIYRDPDEALARLNALASQADLQPRRLAEDLVASPQRLGRMRGSDLLVDGRAARDERGVAMT
ALSELVPLARAHATQFRRHAQRFAIKEQQRRAHLSLSIPALSKPAMARLLEIEAVHERGGPDAYKTAFTY
AAQDRVLVQEIKAVNEALTARFGWSAFTERADAIAERNMVERMPDELAGDRREKLARLFKVVRRFAGEQH
RAERSNRSKLVAGASVERGKEGSTVLPMLAAVTEFMTSVEDEARIRARESAHVSHNRAALVETAGQIWRD
PVDAVNKIETLILKGIAGERLAAAVANDPAAYGALRGSNRIVDRLLAAGRERKKALQAVPEAAGRIRSLS
ASYASALAMETQAITDERQCMAVVIPGLSPAADEALRGLAAAMRKKDAKLDVAARSIEPRVWEEFAAVSR
SLDLRFGRDAILRGETDIVNRLSPAQRRPFEAMQDRLRVLQQTVRMGRTQQIVAERQRRAIDRGRGIIR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-249)

AAA domain (AAA_30)

(391-577)

BID domain of Bartonella effector protein (Bep) (Bep_C_terminal)

(1308-1399)


  Protein structure



No available structure.




Host bacterium

ID   20618 GenBank   NZ_JAKVIN010000022
Plasmid name   B3.7|unnamed Incompatibility group   -
Plasmid size   4939 bp Coordinate of oriT [Strand]   4695..4723 [-]
Host baterium   Shinella sedimenti strain B3.7

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -