Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120163
Name   oriT_p268-2 in_silico
Organism   Enterococcus faecium isolate 2014-VREF-268
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP019994 (2302..2476 [+], 175 nt)
oriT length   175 nt
IRs (inverted repeats)      90..96, 106..112  (ATTTTTT..AAAAAAT)
 91..97, 104..110  (TTTTTTG..CAAAAAA)
 25..33, 36..44  (CACCTTCCT..AGGAAGGTG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 175 nt

>oriT_p268-2
AAAGAGCATAAGGAAAACTGATAGCACCTTCCTACAGGAAGGTGGCTAAGTCGGCTGTGCCAACTGGTTTTCTTACAAAACAACCTTATATTTTTTGATATCACAAAAAAATCCATTTTGGACCTATTTTCGGTCATAATATAGTACCTACTTTTGGTCATAGTTTCGTCGTAGT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   14891 GenBank   WP_077974279
Name   tcpA_B4W81_RS17040_p268-2 insolico UniProt ID   _
Length   458 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 458 a.a.        Molecular weight: 50847.70 Da        Isoelectric Point: 9.2004

>WP_077974279.1 MULTISPECIES: FtsK/SpoIIIE domain-containing protein [Enterococcus]
MAMKLLEKVKKRAEKAESILLDKEPNIKLNGKFSVNMLNTKAKDPTDAIFGIKPDGTIAHFCISEMPHML
VAGTTGSGKSVLLNEILVTAMCHSTPDELKIGIVDPKRVEFGRYKKLPFMLADPITDMDEAYDFFEYLVI
LMHERYKLMEKAGLQHITLYNEYAEKNGLDRFPYVILLVDEYSQLVGTHKEVEGLIVQLGQMARAAGIHV
ILATQSPRSTVVTGIIKANFPSRVCLMVASDLESRIVLDEGGGESLSPKGDMIIKHVNGSMVRAQGAYIS
NKEIETIFNHLRNTMPEPEYVDYRAIVAESRGEGGEDEDFGGIGKAPVRKSAKRNLNTPLANSSSKEPSI
EKKSTFALKLEKNKEEKEKQGAKTLEKLQSEKLEKVLKALDKADSEPQTSNNTNNEQPISSKTKPKTTDP
KVSVNVTITTDKSEKKQVNGTTSPIMQKMLKAKKQVHK

  Protein domains


Predicted by InterproScan.

FtsK/SpoIIIE family (FtsK_SpoIIIE)

(59-186)

  Protein structure



No available structure.




Host bacterium

ID   20593 GenBank   NZ_CP019994
Plasmid name   p268-2 Incompatibility group   -
Plasmid size   99829 bp Coordinate of oriT [Strand]   2302..2476 [+]
Host baterium   Enterococcus faecium isolate 2014-VREF-268

Cargo genes

Drug resistance gene   ant(9)-Ia, erm(A)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -