Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   120076
Name   oriT_SM2D17|unnamed in_silico
Organism   Pediococcus pentosaceus strain SM2D17
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP118671 (2180..2217 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..7, 19..25  (ACACAAC..GTTGTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_SM2D17|unnamed
ACACAACCAACTTTAGTTGTTGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12644 GenBank   WP_060743992
Name   mobQ_PSR64_RS08975_SM2D17|unnamed insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80540.87 Da        Isoelectric Point: 8.7940

>WP_060743992.1 MULTISPECIES: MobQ family relaxase [Lactobacillaceae]
MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGQSYFYARSVMPESFILTPKNAPEWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDNLDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKITEWRHNWAASVNQVLEQKNIP
DRISEKSFIEQGIDDIPTQHEGINSKRHERKEFNQQVKNYRKAKASYKNNQEKVINRGHLDSLSKHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAIGEDVTKKLLTINQQESSLKKADELLNKVV
DRTTKNLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITHAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKMQKQLKGQQAKDDQYRKENIGHYQPLNYKPVSPDY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   20506 GenBank   NZ_CP118671
Plasmid name   SM2D17|unnamed Incompatibility group   -
Plasmid size   57772 bp Coordinate of oriT [Strand]   2180..2217 [-]
Host baterium   Pediococcus pentosaceus strain SM2D17

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -