Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   120007
Name   oriT_pINF352_4 in_silico
Organism   Klebsiella variicola strain INF352
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP083794 (3201..3251 [-], 51 nt)
oriT length   51 nt
IRs (inverted repeats)      6..13, 16..23  (GCAAAATT..AATTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 51 nt

>oriT_pINF352_4
AATCTGCAAAATTTTAATTTTGCGTAGTGTGTGGGTATTTTTAGTGGTGAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   20437 GenBank   NZ_CP083794
Plasmid name   pINF352_4 Incompatibility group   Col440I
Plasmid size   5783 bp Coordinate of oriT [Strand]   3201..3251 [-]
Host baterium   Klebsiella variicola strain INF352

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -