Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 119858 |
| Name | oriT_pDY31-poxtA  |
| Organism | Enterococcus casseliflavus strain DY31 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_MW207674 (14240..14376 [+], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_pDY31-poxtA
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTTCCCCTTTTCAAGCCACATTGTAATACAAATAACTTCGTTCTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTTCCCCTTTTCAAGCCACATTGTAATACAAATAACTTCGTTCTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 20288 | GenBank | NZ_MW207674 |
| Plasmid name | pDY31-poxtA | Incompatibility group | - |
| Plasmid size | 16483 bp | Coordinate of oriT [Strand] | 14240..14376 [+] |
| Host baterium | Enterococcus casseliflavus strain DY31 |
Cargo genes
| Drug resistance gene | fexB, poxtA |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |