Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   119749
Name   oriT_203 19001|pD in_silico
Organism   Klebsiella quasipneumoniae strain 203 19001
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP062142 (6355..6404 [-], 50 nt)
oriT length   50 nt
IRs (inverted repeats)      5..12, 15..22  (GCAAAATT..AATTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 50 nt

>oriT_203 19001|pD
ATCTGCAAAATTTTAATTTTGCGTGGTGTGTGGGTATTTTTCGTGGTGAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   20179 GenBank   NZ_CP062142
Plasmid name   203 19001|pD Incompatibility group   ColRNAI
Plasmid size   7853 bp Coordinate of oriT [Strand]   6355..6404 [-]
Host baterium   Klebsiella quasipneumoniae strain 203 19001

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -