Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 119741
• Name: oriT_FJAT-54424|unnamed1
• Organism: Brevibacillus composti strain FJAT-54424
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP073709 (1026..1058 [+], 33 nt)
• oriT length: 33 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 33 nt

>oriT_FJAT-54424|unnamed1
ATGCGAAGGGCGCACTTATACATCGCTGCGCGA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_KDJ56_RS22060_FJAT-54424|unnamed1

• ID: 12474
• GenBank: WP_198830245
• Name: mobQ_KDJ56_RS22060_FJAT-54424|unnamed1
• UniProt ID: _
• Length: 511 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 511 a.a.
• Molecular weight: 58878.42 Da
• Isoelectric Point: 10.0427

>WP_198830245.1 MobQ family relaxase [Brevibacillus composti]
MAIYHFSVQVISRSQGRSAVAAAAYRAGERLQDERYGHTYDYTKKNVAERAIAAPENAPAWVKDREQLWN
AVEAAEKRKDAQLCREINIALPRELTALQQRELVSTFVTEQFVKRGMIADVAIHRDNPENPHAHIMLTMR
EITPAGFGQKVREWNDKGLLEAWRAEWANYANRALERAGSQERIDHRSLEAQGSDRLPTVHEGPHVRQME
SRGIRTDRGDLNRAVAEYNGLVVSLAAYRREKDALVKETAPRANVAPVESSQKQVAVLIAKGKEIKEQIG
RIDADLNRIEERLRYYNEQQQRISDRVRLEKQLSDMQQQGRSFFGLYNKNSKDIAELTRKIERLGERIQE
HGRFAPSDQEAVELQAQQKQLEQTKRELSGQFFAVRNKVEQLKAGQEKIETKTVTATLRQVILHLKDKAT
GVPVRYVEDDLDKQVEKARFTNRGGVEQLHYRLQDGTERNVLFQNLHMTSQQRDSIFDMIGAAIKGVERA
QQRDEADRQRQMKKKRRGMER

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-212)

Protein structure

No available structure.

Host bacterium

• ID: 20171
• GenBank: NZ_CP073709
• Plasmid name: FJAT-54424|unnamed1
• Incompatibility group: -
• Plasmid size: 10631 bp
• Coordinate of oriT [Strand]: 1026..1058 [+]
• Host baterium: Brevibacillus composti strain FJAT-54424

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -