Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   119310
Name   oriT_SC-1|unnamed6 in_silico
Organism   Sphingobium baderi strain SC-1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP128175 (12194..12226 [+], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_SC-1|unnamed6
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12209 GenBank   WP_323810627
Name   mobQ_QQ987_RS18300_SC-1|unnamed6 insolico UniProt ID   _
Length   403 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 403 a.a.        Molecular weight: 45042.01 Da        Isoelectric Point: 8.5129

>WP_323810627.1 MobQ family relaxase [Sphingobium baderi]
MASFHLAVKTIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHSALVVPADAPAWANDRAALW
NAAEQAETRKNSTVAREYEIALPAELSAEARRELALGLAREISERHGVAVDVAIHAPGREGDQRNHHAHL
LTTTRRIGPEGLGEKTRELDQKTSGEVERWRGRWAEMQNVALERAGSVERVDHRSHQRQGIEQEATVHMG
PSATAMERRAEHQAMREGRAYEPVTMVGQHNAGVIERRGLRQYIERGTEWLRDAGQRISGRLHAFAATLS
GAVDRDRRDAAEAQRQEQLAAERAREQAQERQQAQEREKVAEKFRTIAGKREAGAHGYGDHNSDWKATPE
ALRKAVDAYNGANQHTKDLYIEQIQREPQMARAVGQLLHERELVLQRDRGMSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-219)


  Protein structure



No available structure.




Host bacterium

ID   19740 GenBank   NZ_CP128175
Plasmid name   SC-1|unnamed6 Incompatibility group   -
Plasmid size   12940 bp Coordinate of oriT [Strand]   12194..12226 [+]
Host baterium   Sphingobium baderi strain SC-1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -